Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2347 ATGGAAACTTTGTGCTTGGTGTATCTTCTTCTTCTGCTAGCTTGTTATCTGTCAAAAGTTCAGTTTGTGGATGCGAATGCGGTTCTCCGGGACCAAACTACATTGGTTGCCATTAACTTGGAGCTTAGAGTACCTGAATGGAATGCCAACAACTCAAATTACTGCTCTTGGCAAGGCGTTAGCTGTGGTAATCGCTCAATGGTGGAAAAGCTGGATCTTTCTTACCGCAACCTTCGAGGTAATGTAGCTTTAATTTCCGATCTTAAAGCTTTGAAGCGGCTTGACCTTTCAAACAATAACTTTGATGGATTGATTCCTCCAGCTTTTGGAAATTTGTCTGATCTTGAAGTTCTAGATTTGTCTTCAAATAAGTTCCAAGGTTCAATTCCACCAGAATTGGGTGGCCTTAGAAACCTTAAATCTTTAAACCTTTCCAATAACTTACTTGTGGGAGAAATACCAAGTGAACTTCATAGCCTAGAGAAATTGCAGGATTTTCAAATTTCTAGTAATCAATTGAGTGGTTCAATACCTTCTTGGGTGGACAATTTGACCAATCTGAGAGTTTTTACAGCCTATGAGAATCATTTAAATGGAAGGATTTCAGATAATCTGGGCATGAATTCTGAGCTTCATATACTTAACCTGCATTCCAACCAGTTAGAAGGCCCAATACCAGCAAGCATTTTTGCTACAGGGAAGCTGGAAGTTCTAATTCTCACACAGAACAAGTTGAGCGGTGATCTTCCTGAAGAATTTGGGAATTGCCAAGGCCTTTCCAACATTCGAATTGGCAACAATCATCTTCTAGGTACTATTCCTAAGACCATTGGAAATATCAGTAGCCTTAACTACTTTGAAGCAGACAATAACAATCTTTCTGGTGAGGTAATGTCAGAATTTGCTCAGTGTTCTAATCTCACCCTCCTGAATTTAGCTTCAAATGGATTTACTGGAACAATTCCACCAGAATTTGGACAACTTATGAACCTGCAGGAATTGATCCTGTCTGGAAATAGCCTATTTGGCGACATTCCCAAATCAATTTTAAGGTGCAAGAATCTTAACAAGCTTGATATAAGTAATAACAGATTCAATGGCACAATACCAAACGAAATCTGCAATATCTCTAGGTTGCAGTACTTGTTGTTGGGTCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAGTTGTGTAAAACTTCTTGAATTGCAATTGGGCAGTAACTATTTGACCGGAATTGTTCCTTCTGAGATTGGTCACATTAGGAACTTACAGATTGCTTTAAATTTTAGCTTCAATCATCTTCGTGGATCATTGCCCTCTGAATTAGGAAAACTGGACAAGCTTGTTTCTTTGGACGTTTCAAACAATCGTCTCTCAGGCAATATCCCAGCTGAGCTAAAGGGAATGTTGAGCTTGATAGATGTTAACTTCTCAAATAATCTTCTCAGTGGCCCAGTACCCACATTTTTACCATTCCAAAGTAGTCCCATTTCAAGTTTTATGGGCAATAAAGCCCTTTGTGGGGAGCCATTAAACTCTTCATGCGGAGATCTTTATGATGACCACAAGAATTACCATCACAGAATTTCTTATAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCAGTTTTTACGTCAGTAAGTATAGTTGTTTTGCTGTTTATGATCAGAGAGAGGCAAGAAGAAGTTGCTAAAGACGGTGGGATTGTGGATGATGGAACCAGTAACAAAGCAACTATAATGGCAGGGACTGTTTTTGTTGAGAATCTAAGACAAGCGGTAGACCTTGATGCTGTTGTCAAAGCAACTCTAAAAGATTCTAATAAGCTTAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAGTCATGCCTTCAGGGATGATCTTATCTGTAAGGAGACTGAAGTCCGTGGACAAGACCATAATCAACAACCAGAATCAGATGATTAGAGAACTGGAAAGGCTGAGCAAACTCTGTCATGATAATCTAGTGCGACCCATTGGATATGTTATTTATGAAGACGTTGCCCTTCTCTTGCATCATCACTTACCTAATGGAACATTAGCTCAACTTCTTCATGAATCTACCAAGCAACCTGAATATCAGCCTGACTGGCCTACTAGACTATCCATTGCCATTGGAGTAGCAGAAGGTTTGGCTTTCCTTCATCATGTTGCAATTATCCACCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAATTTGAAGCCTTTGGTTGGGGAGATTGAGATATCAAAACTTATAGACCCAACCGAAAGCACTACAAGTATAAGTGCAGTTGCTGGTTCTTTTGGCTATATACCACCGGAATATGCATACACGATGCAAGTTACAGCACCAGGAAATGTTTATAGCTATGGTGTTGTTCTTCTTGAGATCCTCACAACTCGACCACCAGTTGACGAGGCTTTTGGTGAAGGCTTAGATTTGGTGAAATGGGTTCATAGCGCTCCAGTAAGAGGGGAAACTCCAGAACAGATACTGGACGCAAGGCTTAGCACAGTCTCCTTTGGATGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTCGCATTGCTCTGCACTGACAACACACCAGCAAAGCGACCAAAAATGAAGAAGGTTGTAGAAATGCTTCAAGAAATAAATCAAAACTGA 2673 0.4014 METLCLVYLLLLLACYLSKVQFVDANAVLRDQTTLVAINLELRVPEWNANNSNYCSWQGVSCGNRSMVEKLDLSYRNLRGNVALISDLKALKRLDLSNNNFDGLIPPAFGNLSDLEVLDLSSNKFQGSIPPELGGLRNLKSLNLSNNLLVGEIPSELHSLEKLQDFQISSNQLSGSIPSWVDNLTNLRVFTAYENHLNGRISDNLGMNSELHILNLHSNQLEGPIPASIFATGKLEVLILTQNKLSGDLPEEFGNCQGLSNIRIGNNHLLGTIPKTIGNISSLNYFEADNNNLSGEVMSEFAQCSNLTLLNLASNGFTGTIPPEFGQLMNLQELILSGNSLFGDIPKSILRCKNLNKLDISNNRFNGTIPNEICNISRLQYLLLGQNSIRGEIPHEIGSCVKLLELQLGSNYLTGIVPSEIGHIRNLQIALNFSFNHLRGSLPSELGKLDKLVSLDVSNNRLSGNIPAELKGMLSLIDVNFSNNLLSGPVPTFLPFQSSPISSFMGNKALCGEPLNSSCGDLYDDHKNYHHRISYRIILAVIGSGLAVFTSVSIVVLLFMIRERQEEVAKDGGIVDDGTSNKATIMAGTVFVENLRQAVDLDAVVKATLKDSNKLSSGTFSTVYKAVMPSGMILSVRRLKSVDKTIINNQNQMIRELERLSKLCHDNLVRPIGYVIYEDVALLLHHHLPNGTLAQLLHESTKQPEYQPDWPTRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANLKPLVGEIEISKLIDPTESTTSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRPPVDEAFGEGLDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKKVVEMLQEINQN 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2347 890 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 688 890 - -
Glsi02g2347 890 SUPERFAMILY Protein kinase-like (PK-like) 609 887 IPR011009 -
Glsi02g2347 890 CDD STKc_IRAK 615 887 - -
Glsi02g2347 890 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 133 225 - -
Glsi02g2347 890 Gene3D Transferase(Phosphotransferase) domain 1 688 890 - -
Glsi02g2347 890 SMART LRR_typ_2 449 472 IPR003591 -
Glsi02g2347 890 SMART LRR_typ_2 136 160 IPR003591 -
Glsi02g2347 890 SMART LRR_typ_2 88 111 IPR003591 -
Glsi02g2347 890 SMART LRR_typ_2 328 352 IPR003591 -
Glsi02g2347 890 SMART LRR_typ_2 112 135 IPR003591 -
Glsi02g2347 890 SMART LRR_typ_2 376 400 IPR003591 -
Glsi02g2347 890 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Glsi02g2347 890 FunFam Leucine-rich repeat receptor-like kinase 30 132 - -
Glsi02g2347 890 SUPERFAMILY L domain-like 205 518 - -
Glsi02g2347 890 ProSiteProfiles Protein kinase domain profile. 609 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2347 890 SUPERFAMILY L domain-like 43 307 - -
Glsi02g2347 890 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Glsi02g2347 890 Pfam Leucine rich repeat 330 389 IPR001611 GO:0005515
Glsi02g2347 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 228 522 - -
Glsi02g2347 890 Gene3D Ribonuclease Inhibitor 181 231 IPR032675 -
Glsi02g2347 890 Gene3D Ribonuclease Inhibitor 232 521 IPR032675 -
Glsi02g2347 890 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 579 687 - -
Glsi02g2347 890 Pfam Protein tyrosine and serine/threonine kinase 612 884 IPR001245 GO:0004672|GO:0006468
Glsi02g2347 890 ProSitePatterns Tyrosine protein kinases specific active-site signature. 732 744 IPR008266 GO:0004672|GO:0006468
Glsi02g2347 890 Gene3D Phosphorylase Kinase; domain 1 576 687 - -
Glsi02g2347 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 195 324 - -
Glsi02g2347 890 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Glsi02g2347 890 PRINTS Leucine-rich repeat signature 91 104 - -
Glsi02g2347 890 PRINTS Leucine-rich repeat signature 112 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2347 Glsi-ChrGlsi02 73817171 73819946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2347 10 889 Receptor kinase-like Gene Family AT2G41820 72.140 0.0 1282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g2347 PK_Tyr_Ser-Thr 2e-27 CL0016