Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2332 ATGGAGGGTGGCATGGTGAGGGATAAAGGGTTGTTGGAATATGGAAGGAAGACGACGCCGCCGCCATTCTTGTTGAAGACGTACAAGCTGGTGGAGGATCCGACAACAGACGACGTTGTGTCGTGGAACGGAGATGGAAGAGCGTTCGTGGTGTGGCAACCGGCGGAGTTTGCTCGCGATGTGCTTCCAAAGCTCTTCAAGCACTGCAACTTCTCTAGCTTTGTACGCCAGCTCAATACCTATGGTTTTCGTAAAGTTGCAACAAGAAGATGGGAGTTTTGTAACAGCAACTTCCGTAAGGGAGAGAGAGAGCTGCTATGTGAGATTCGACGAAGAAAAGCACAACCACCCGGTGCTCCGTTAATCCAAGCCGCACGTCAACACTCTAATGAAAATCGAAGGTCTTCTTCATTAACCTCTACATCTTCGGCAACAAGTCTGATCCATGAAAACGAGCAACTCAGAAAGGAGAATGGGGTGCTGAGCTCTGAGCTCACAACCATGAAGAGCAGGTGTATGAAGCTGCTTCACTTGGTGGCCAAATATGCGAAGAAAGAAGATGAGAGGCCAATGTTATTTGGGGTCAGACTCCAACTTGAAGAAGATGGAGATCAGAGGGACATGAAGAGGAAGAGAGCTGAGAATATCACAGAAAGTGCAATTATTTTGCTTTCTCAGTCATGTAAATAG 690 0.4754 MEGGMVRDKGLLEYGRKTTPPPFLLKTYKLVEDPTTDDVVSWNGDGRAFVVWQPAEFARDVLPKLFKHCNFSSFVRQLNTYGFRKVATRRWEFCNSNFRKGERELLCEIRRRKAQPPGAPLIQAARQHSNENRRSSSLTSTSSATSLIHENEQLRKENGVLSSELTTMKSRCMKLLHLVAKYAKKEDERPMLFGVRLQLEEDGDQRDMKRKRAENITESAIILLSQSCK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2332 229 Gene3D - 15 113 IPR036388 -
Glsi02g2332 229 MobiDBLite consensus disorder prediction 125 149 - -
Glsi02g2332 229 FunFam Heat stress transcription factor B-4 15 113 - -
Glsi02g2332 229 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Glsi02g2332 229 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2332 229 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 192 IPR027725 -
Glsi02g2332 229 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2332 Glsi-ChrGlsi02 73633466 73634232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2332 20 182 HSF AT2G41690 56.111 5.72e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi02g2332 HSF_DNA-bind 6e-32 CL0123