Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2327 ATGGGGAGAGGGAAAATTGAGATTAAGAAGATAGAGAATTTGAATAGCAGGCAGGTTACTTTCTCCAAGCGTCGTAATGGGTTGCTTAAGAAAGCCAAGGAATTGTCCGTTTTGTGTGATGCAGAGGTAGCAGTCATTATATTCTCAAGCACCGGAAAGCTTTATGAGTTTTCAAACACGAGCATGGAGCACACGCTTTCAAGGTACAGCAAAGGCCTGGAATTGGATAATGCAAAGCAACCTTTAGATGAGCCACCAACAGAGGATGCGGAACCTGATATAAACTTTCTGAAGGATGAAATGAGAAAGCTTCGCTTAGCATACTTAAGGATGATGGGTAAGGAGCTTGATGGATTGAAATTTAAAGAGCTGCAGCACCTAGAAAATCAACTGTGTGAAGGGATATTATCTGTAAAAGACAAGAAGGAACAGGTACTCGTAGAGCAGCTTAAGAGGTCCAGATTACAGGAGCAACAGGCCATGATGGAGAATGAAGCTCTGCGCAAACAGCTGGAGGAGATACAAAGTAAAACAAAGACAGACTTTGGTAATTTCAATCCTCTAGAAAGGAGGTTTTCCATCACTTCTTCCAAACCCATTTTCGATTGTGCGTCAGAGAAAGAGGAGCTTTCAGACACTTCCTTGCAGTTGGGGTTGTCAACAGACTTCGGCCACAAGAGGAAAGCACTGAAACTAGAAGCTTGCAACGACTGA 714 0.43 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGLELDNAKQPLDEPPTEDAEPDINFLKDEMRKLRLAYLRMMGKELDGLKFKELQHLENQLCEGILSVKDKKEQVLVEQLKRSRLQEQQAMMENEALRKQLEEIQSKTKTDFGNFNPLERRFSITSSKPIFDCASEKEELSDTSLQLGLSTDFGHKRKALKLEACND 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2327 237 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi02g2327 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Glsi02g2327 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Glsi02g2327 237 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Glsi02g2327 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Glsi02g2327 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 Coils Coil 150 177 - -
Glsi02g2327 237 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi02g2327 237 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Glsi02g2327 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi02g2327 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2327 Glsi-ChrGlsi02 73594608 73598243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2327 1 229 MADS-box Gene Family AT5G13790 48.718 1.28e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi02g2327 K-box 1.9e-15 No_clan