Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2317 ATGGAGAGTCTGTTGAAGGATTTCGTAATAGAGAATAAGAATCCATCTATTGAGGCTTCCACGAGATGGAGAGCCGCCGTCAAATTGGTAAGGAACCCCCGGAGAAGGTTCCGCATGGTCGCAGATCTCGCAAAACGTTCCGAAGCTGAGAAGATGAGGAAGAAAATTCAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCGGCATTGCAGTTTATCGATGCTGGTGGTAAAGTTGAACACAAGCTATCAGAAGAGGTGAGAGAAGCTGGTTTTGGTATTGATCCAGATGAGATTGCATCAATTGTTCGTGGCCATGATTATGATACATTGAAAGTAATTGGTGGAGTTACAGAGATTGTGGGGAAGCTCTGTGTCTCAGTGGATGAAGGTGTCAATGAAGACAGTATAAATACCAGGCAACAGATTTATGGGTTCAACCGTTATACAGAGAAACCTTCTAAAAACTTCCTGATGTTTGTGTGGGAAGCACTGCAGGACTTAACCCTAATGATTCTGATGGTTTGTGCTGTTGTTTCTATAGGTGTAGGAATTGCCACTGAAGGGTGGCCGAAGGGTTTGTATGATGGTCTGGGAATCATATTAAGTGTGTTCTTGGTTGTTATTGTTACTGCTGTGAGTGACTACAAGCAATCCTTGCAGTTCAGAGATTTGGACAAAGAGAAGAAAAAGATCTCTGTTCAGGTTACCAGGGACGGGAAAAGACAGAAGATCTCAATTTATGATGTGGTGGTGGGAGATATCGTTTATTTATCAACTGGGGATCAAGTTCCAGCTGATGGGATTTACATATCTGGGTACAGCTTGCTGATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATCTTCACGAAGGAAAACCTTTTCTTCTTTCGGGAACCAAAGTGCAAGATGGTCAGGGGAGGATGTTAGTGACAACAGTTGGCATGAGGACCGAATGGGGAAAGTTGATGGAAACTCTAAGCGAGGGAGGAGAGGATGAGACCCCATTGCAGGTCAAATTGAATGGAGTTGCTACAGTTATTGGCAAGATTGGTCTGACTTTCGCTGTGCTGACATTTTTGGTGTTGACAATAAGATTTCTGGTGGAAAAGGCAGTTCATGGCGAGTTCACTGATTGGTCTTCAACTGATGCAATAAAGCTTCTGAACTACTTTGCTATTTCCGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCTTTGGCTGTGACACTCAGCCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTAGTGAGGCATCTTTCTGCGTGTGAGACAATGGGTTCCGCCAGTTGCATTTGCACAGACAAGACAGGGACGTTAACCACTAACCATATGGTGGTCGATAAAATATGGATATGCGAAAAAACCATGGAAACGCAAGGTAATGAGAGTGGAACCAAACTGAAAACAGAGATTTCTGAAGGAGCTCTGAGCGTCCTTTTGCAGGCTATATTTCAAAATACTTCTTCGGAAGTAGTCAAGCATAAGGATGGTAAGAACAAAATATTGGGAACACCAACAGAATCGGCATTAATTGAATTTGGCTTGCTTCTGGGCGGTGATTTTGATGCCCAGCGCAGGGAGTATAGGATACTTAAGGTTGAGCCATTCAATTCAGTCCGGAAGAAGATGTCCGTCCTTGTGGGTCTTCCTGATGGACGGGTACAAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAACACTGTGACAAAATTATTGATTGCAATGGAGAAGCTGTTGATCTTCCGGAAGACCGGGCAAAGAATGTCTCTGATATTATAAACGGTTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTAGCTGTCAAAGATATAGATGAAAACCAAGGGGAAACCGGTATCCCTGATAATGGCTATACACTGATAGCCATTGTAGGAATCAAGGATCCTGTGCGCCCAGGGGTCAAGTATGCTGTTCAGACTTGTTTAGCAGCTGGAATAACCGTCCGTATGGTTACTGGTGATAATATAAATACAGCTAGGGCTATAGCTAAAGAATGTGGTATACTCACTGAGGGTGGTGTAGCCATAGAAGGACCAGAATTTCGTAATTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCCCGATCCTTACCGCTTGATAAACATACCTTGGTAACCCATTTGAGGAACACGTTTGGCGAAGTTGTTGCTGTTACCGGCGATGGAACCAACGATGCTCCTGCACTGCACGAGGCAGATATTGGACTTGCGATGGGCATAGCTGGAACCGAGGTGGCCAAAGAAAATGCCGATGTCATCATAATGGATGACAACTTCTCTACTATTGTGAATGTGGCCAAATGGGGACGGGCAGTATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAATGTCGTTGCTCTGGTTATCAACTTCGTTTCTGCATGCATCACAGGATCTGCTCCACTAACAGCTGTACAATTGCTGTGGGTGAACTTGATTATGGATACTCTGGGTGCATTGGCATTGGCCACTGAGCCTCCTAACGATGGACTTATGAAAAGGCTCCCAGTCGCAAAGGGGGCAAGCTTCATCACCAAAACCATGTGGAGGAATATAATCGGTCAAAGTATATATCAATTAATTGTCCTTGCAATTCTCAATTTTGACGGGAAGAGGCTACTGAGAATTAGCGGTTCAGATGCAACTATTGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTATTCAATGAGGTAAACAGCCGAGATATAGAAAAGATAAACGTATTCAGAGGCATATTTGACAGTTGGATGTTTTTAGGGATTATTTTCTCCACAGTGGGATTTCAAATAATCATAGTTGAGTTCCTGGGAACTTTAGCCAGCACTGTGCCTCTTAACTGGCAACTTTGGTTACTCAGTGTCCTAATTGGAGTTGTTAGCATTCCAGTAGCGGCTATTCTCAAGTGCATCCCAGTTGAAAGAGATATTGTTCAGCACCATGATGGTTACGAGGAACTGCCTTCTGGTCCCGAGCTGGCATAA 3099 0.4311 MESLLKDFVIENKNPSIEASTRWRAAVKLVRNPRRRFRMVADLAKRSEAEKMRKKIQEKIRIALYVQKAALQFIDAGGKVEHKLSEEVREAGFGIDPDEIASIVRGHDYDTLKVIGGVTEIVGKLCVSVDEGVNEDSINTRQQIYGFNRYTEKPSKNFLMFVWEALQDLTLMILMVCAVVSIGVGIATEGWPKGLYDGLGIILSVFLVVIVTAVSDYKQSLQFRDLDKEKKKISVQVTRDGKRQKISIYDVVVGDIVYLSTGDQVPADGIYISGYSLLIDESSLSGESEPVNLHEGKPFLLSGTKVQDGQGRMLVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTIRFLVEKAVHGEFTDWSSTDAIKLLNYFAISVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTMETQGNESGTKLKTEISEGALSVLLQAIFQNTSSEVVKHKDGKNKILGTPTESALIEFGLLLGGDFDAQRREYRILKVEPFNSVRKKMSVLVGLPDGRVQAFCKGASEIILKHCDKIIDCNGEAVDLPEDRAKNVSDIINGFASEALRTLCLAVKDIDENQGETGIPDNGYTLIAIVGIKDPVRPGVKYAVQTCLAAGITVRMVTGDNINTARAIAKECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTHLRNTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVAKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMKRLPVAKGASFITKTMWRNIIGQSIYQLIVLAILNFDGKRLLRISGSDATIVLNTLIFNSFVFCQVFNEVNSRDIEKINVFRGIFDSWMFLGIIFSTVGFQIIIVEFLGTLASTVPLNWQLWLLSVLIGVVSIPVAAILKCIPVERDIVQHHDGYEELPSGPELA 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 767 1013 - -
Glsi02g2317 1032 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 PRINTS H+-transporting ATPase (proton pump) signature 607 625 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 Gene3D - 15 76 - -
Glsi02g2317 1032 SFLD p-type atpase 431 802 IPR044492 -
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 15 75 - -
Glsi02g2317 1032 Gene3D - 459 654 IPR023299 GO:0000166
Glsi02g2317 1032 CDD P-type_ATPase_Ca_PMCA-like 138 883 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Glsi02g2317 1032 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 211 332 - -
Glsi02g2317 1032 Gene3D - 132 332 - -
Glsi02g2317 1032 Gene3D - 164 1009 - -
Glsi02g2317 1032 Gene3D - 446 795 IPR023214 -
Glsi02g2317 1032 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 459 654 - -
Glsi02g2317 1032 SFLD C1.7: P-type atpase like 431 802 - -
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 164 221 - -
Glsi02g2317 1032 NCBIfam HAD-IC family P-type ATPase 391 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 NCBIfam HAD-IC family P-type ATPase 547 695 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 NCBIfam HAD-IC family P-type ATPase 201 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 NCBIfam HAD-IC family P-type ATPase 715 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g2317 1032 SMART Cation_ATPase_N_a_2 108 186 IPR004014 -
Glsi02g2317 1032 PANTHER CATION TRANSPORTING ATPASE 75 1011 - -
Glsi02g2317 1032 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1011 IPR023298 -
Glsi02g2317 1032 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Glsi02g2317 1032 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 659 IPR023299 GO:0000166
Glsi02g2317 1032 FunFam Calcium-transporting ATPase 647 795 - -
Glsi02g2317 1032 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi02g2317 1032 Pfam Cation transport ATPase (P-type) 505 589 - -
Glsi02g2317 1032 SUPERFAMILY HAD-like 448 855 IPR036412 -
Glsi02g2317 1032 Pfam Cation transporting ATPase, C-terminus 835 1008 IPR006068 -
Glsi02g2317 1032 Pfam Cation transporter/ATPase, N-terminus 117 181 IPR004014 -
Glsi02g2317 1032 Pfam E1-E2 ATPase 232 427 - -
Glsi02g2317 1032 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2317 Glsi-ChrGlsi02 73483137 73490747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2317 56 1029 Primary Pumps ATPases AT3G57330 73.846 0.0 1494
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2317 02 73483137 73490747 Glsi11g1374 11 8637717 8644631 CCT
Glsi02g2317 02 73483137 73490747 Glsi02g2317 02 73483137 73490747 ECH