Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2312 ATGTCACCCACTCAGCGTATGTTAGCACAGTTTGATGCTTCGTACACCGCCTGCGTCTACGACCCTCCTCTTTCTCCTGGCTACCCACCTTATCCTACGCACCATTCCATTCCCTTCCCTTCCTCCGTACTCCTTTTAGGGCTAAGAAGGCAACCCAAGGACTCGCTCTCGTACTCGAGTCTCTTCAATCTTGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATTGCAAATCACAGTAATGGGAATATGCACCGAAGGGAGGTAAATTTGTTGAAGAAGAGAAAGTGGTCTCAAAACAGTGACGAGGAGGACAAGGGCAACTTTTATGGGACATACATGACAGAGGAGCGATATCGATCAATGCTTGGGGAACATATTCAGAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAGAATCTGGTTAGTGCTCCGCTTCATAAAAGTAATGTAGGTTCAAAAGCTCGAAAGTCAGGGAACGAGCACAGAGGAGGATTACATGCTGTGGATACTACATCTGAGTGGCTGAATGATACTAATACTCAGAAACCTGGAAAATACCGTGATGCCGATTTCACACAGCTATATGGTTCTGATAGAACTATCTATGAACCAGCTTCTTTGGATATTGGGGATGGTGTCACTTACAAAATTCCTCCAACTTATGATAAGCTAGCAGTAATGCTGAACCTTCCAAGTTTCTCGGATATCCGGGTGGAGGAATTTTACTTAAAGGGTACCTTAGATTTGGGGTCCCTGGCTGCAATGATGGCTTCTGATAAGAGGGTTGGAACTAGAAACCGAGCAGGCATGGGGGAAACCCAATCCCAATATGAATCACTTCAGGCTCGATTGAAGGCCATGTCAGCTTCTAATTCGGCTCAGCAGTTTAGTCTGAAAGTATCTGATATTGGTTTGAATTCCTCCATCCCTGAGGGAGCTGCTGGAAGTATAAGGCGATCTATTTTGTCTGAGGGTGGTGTACTGCAGGTTTATTACGTAAAGGTTTTGGAGAAAGGTGACACATACGAGATCATTGAACGAAGCCTACCCAAGAAGCAAAAGATAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGATAGAATTGGAAAGGTCTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGAATTTTTACTGCTTTCCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAAATTGATGAAGGGTGCTGCCATTCGCACCCGAAAACTAGCCAGAGACATGTTGCTGTTCTGGAAACGAGTAGACAAGGAGATGGCAGAAGTGAGGAAAAAAGAAGAGAAAGAAGCTGCTGAGGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCGAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAGCAAACTGAACTATACAGTCACTTTATGCAGAACAAGTCAAACTTACTGTCTTCAGAAGCTTTACCCATGGTAGATGAAAAAGCAGATGATCAAGATGCATTGCTTGGATCTTCAGATGCTGGGCCTAGTGAGGAGGAAGACCCTGAAGAGGCTGAACTGAAGAAGGAAGCCTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACTAGTGCTTTTGACATTGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGTGCTTTCAGAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACTCCATCTACCATGCCAGTGGCATCCACAGTTCGGACACCAGAATTGTTTAGAGGTTGTCTTAAAGGATATCAGCTAAAAGGTCTTCAGTGGCTAGTCAATTGTTATGAGCAGGGTCTGAATGGCATACTAGCTGATGAAATGGGACTTGGAAAGACCATCCAGGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTCTGGTTGTTGCACCTGCATCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGACATGAGAGTGCTTCCTTATTGGGGTGGACTTCATGAGCGGACAGTACTTAGAAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACATTCTCATCACAAGCTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAAACAGTATAAGGTGGAAGACACTCCTCAGCTTTAATTGTCGGAACCGCCTGCTGTTAACTGGTACACCAATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCACGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAATCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAGCAGATTACATTCAATTCTAAAGCCTTTCATGTTGCGACGAGTTAAAAAAGATGTAATATCAGAGCTGACTAGGAAAACTGAAGTAACAGTGCATTGCAAATTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAATTGTTTGAGAGGAGTGAGGGAACCACATACTTTAACTTTGGAGAGATTCCAAATTCACTTCCACCTCCTCCATTTGGGGAGTTGGAGGACATATACTATTCTGGAGGTCACAATCCTATATCATACAAGGTACCAAAACTTGTCTATGAAGAAACCATGCGAGGTTCTGAAATCTTCAGTTCAGCTGTTACTCGTGGTGTCAGCAGAGAATCTTTTCAGAAACATTTTAATATATTTAGACCAGAAAATGTTTATCAATCTATCTACTCTCAAGGGAATAAATCAATTGGGTTATGTGTTAAAAGTGGAAATTTTGGTTTTACCCATTTGATGGACATGGCTCCACAAGAGGTGACGTTTTTAGCCACTGGTTCTTTTATGGAGAAACTACTGTTTTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTAGACTTTCTTACAGAGACTATAGATAATGATCCTGACTGTAGTTACTTAGAGAAAGGGAAAGTGAGGGCTGTAACACGAATGTTATTGGTGCCAACAAGATCTGAGGCTAAGTTTCTTCAAAGAACATTTGCAACTGGGCCCAGTCATGCCCCTTTTGAGGCCTTGGTCGTCCCGCATCAGGATAGGCTTTTGTCTAACGCAAGGCTTCTTCACTCAGCATACACATATATCCCTCGAACTAGAGCTCCGCCAATTGGTGCCCATTGCTCAGAACGAAACTTCTCTTATAAAATAATTGAAGAACTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACTTCTGAGTATAATGGACCTAGAAAACCAGATGGTCCTCCTCATCACCTAATTCAAGAGATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTGAGTTAACATACAAAATTTTAGGGTCTTCACCCCCTATGCGAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTCGATATATTATTGAAACGCTTGCGGTCCGAAAATCATCGTGTTCTATTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCATCGGCTATTCAGGACCGCAGAGATATGGTCAGAGACTTCCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATTTTTTATGAGAGTGATTGGAATCCAACATTGGATCAACAGGCAATGGATAGAGCTCATCGTCTGGGTCAGACAAAAGACGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTTGTCATGACAGGTGGTTCTGTCGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTGCAGTTGGAGCAGAAACTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAGAAAACAAACTATGAAGGGTATACGTGTAAATGAAGAAGGTGATGCATCCCTGGAAGATCTAACAAACTCTGGAGCACAGGGTACAGATGATATTTCTCTTGACCCGGAGGGACCAAAGTCTAGTAATAAAAAGAGAAAAGCTGCCGCTGACAAGCAAACTGCATCCAGGCTAAAGAATTCTCAAAAGATGAATGAATTTAGTACTATGCCTATGGATAATGATTTGTACGATGCCAATCAAAATACTGATCCTTTGGGCCAGAAACCCAAGAGAGCGAAGAAGATAAAGAGTGGGAACGAGAAGTTTGAAGACGCATTTGCTGGCACAGCTACTCAATTTGCAGAGCAGACCCAATTTCCACCTCCACGTGATTTTAGTACTGGAGGGTCAGACACTTGA 4731 0.4194 MSPTQRMLAQFDASYTACVYDPPLSPGYPPYPTHHSIPFPSSVLLLGLRRQPKDSLSYSSLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGNMHRREVNLLKKRKWSQNSDEEDKGNFYGTYMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNLVSAPLHKSNVGSKARKSGNEHRGGLHAVDTTSEWLNDTNTQKPGKYRDADFTQLYGSDRTIYEPASLDIGDGVTYKIPPTYDKLAVMLNLPSFSDIRVEEFYLKGTLDLGSLAAMMASDKRVGTRNRAGMGETQSQYESLQARLKAMSASNSAQQFSLKVSDIGLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPSLIEKEEMDRIGKVWVNIVRRDIPKHHRIFTAFHRKQLIDAKRFSENCQREVRMKVSRSLKLMKGAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPMVDEKADDQDALLGSSDAGPSEEEDPEEAELKKEALKAAQEAVSKQRSLTSAFDIECLRLRQAGETDVLSEEVAGASNIDLQTPSTMPVASTVRTPELFRGCLKGYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPDMRVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHSILKPFMLRRVKKDVISELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYFNFGEIPNSLPPPPFGELEDIYYSGGHNPISYKVPKLVYEETMRGSEIFSSAVTRGVSRESFQKHFNIFRPENVYQSIYSQGNKSIGLCVKSGNFGFTHLMDMAPQEVTFLATGSFMEKLLFSMVRWEQKFINEVVDFLTETIDNDPDCSYLEKGKVRAVTRMLLVPTRSEAKFLQRTFATGPSHAPFEALVVPHQDRLLSNARLLHSAYTYIPRTRAPPIGAHCSERNFSYKIIEELHDPWVKRLFVGFARTSEYNGPRKPDGPPHHLIQEIDSELPVAQPALELTYKILGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRSENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSAIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKRKQTMKGIRVNEEGDASLEDLTNSGAQGTDDISLDPEGPKSSNKKRKAAADKQTASRLKNSQKMNEFSTMPMDNDLYDANQNTDPLGQKPKRAKKIKSGNEKFEDAFAGTATQFAEQTQFPPPRDFSTGGSDT 1576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 78 107 - -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 174 193 - -
Glsi02g2312 1576 Gene3D - 632 872 IPR038718 -
Glsi02g2312 1576 Gene3D - 1227 1462 IPR027417 -
Glsi02g2312 1576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 647 818 IPR014001 -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 1497 1530 - -
Glsi02g2312 1576 Coils Coil 472 511 - -
Glsi02g2312 1576 SMART ultradead3 631 826 IPR014001 -
Glsi02g2312 1576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 863 IPR027417 -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 1439 1543 - -
Glsi02g2312 1576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 865 1409 IPR027417 -
Glsi02g2312 1576 PANTHER HELICASE SRCAP-RELATED 135 573 - -
Glsi02g2312 1576 SMART helicmild6 1285 1368 IPR001650 -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 1439 1459 - -
Glsi02g2312 1576 FunFam DNA helicase INO80-like protein 1227 1477 - -
Glsi02g2312 1576 Pfam SNF2-related domain 650 937 IPR000330 GO:0005524|GO:0140658
Glsi02g2312 1576 FunFam Putative DNA helicase INO80 607 885 - -
Glsi02g2312 1576 Pfam Helicase conserved C-terminal domain 1259 1368 IPR001650 -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 1556 1576 - -
Glsi02g2312 1576 Pfam DNA-binding domain 396 524 IPR020838 GO:0003677
Glsi02g2312 1576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1259 1442 IPR001650 -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 540 560 - -
Glsi02g2312 1576 Gene3D - 873 942 IPR027417 -
Glsi02g2312 1576 CDD SF2_C_SNF 1247 1379 - -
Glsi02g2312 1576 MobiDBLite consensus disorder prediction 1480 1496 - -
Glsi02g2312 1576 ProSiteProfiles DBINO domain profile. 400 525 IPR020838 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2312 Glsi-ChrGlsi02 73441435 73455922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2312 656 948 RAD5 or RAD16-like Gene Family AT5G43530 29.499 3.60e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi02g2312 SNF2_N 1.1e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2312 02 73441435 73455922 Glsi02g2312 02 73441435 73455922 ECH