Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2309 ATGTCACTAGGGTTTAGGACATTGCCCCTGTGGAGCAGAGCAGCTTGTTTGCCAATGGCGAACTACGACCTTACCCCACGGATCGCGCCGAATCTGGACAGGCACCTCGTATTCCCTCTTCTTGAGTTCCTGCAGGAACGCCACCTCTATGAGAACGATCAGATCCTTAAGGCCAAGATCGAGCTCCTTAACAAGACCAACATGGTCGACTATGCCATGGACATCCACAAGAGCCTCTACCACACCGAAGATGTTCCCCAAGACATGGTCGAAAGGAGGGTGGAAGTGGTGGCCAGGCTCAAGGCACTAGAGGAGGCCGCCGCCCCGCTCGTTGCCTTTCTGCAGAACCCCAGTGCTGTGCAGGATTTGAAGGCTGACAAGCAGTATAATCTTCAGATGCTCAATGACAGATACCAGATTGGTCCTGATCAAATAGAGGCATTATATCAATACGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGCGCTGCTGATTATCTTTACCAGTACAGGGCTTTATGCACAAATAGTGAAAGGAGTCTGAGTGCATTATGGGGAAAGCTAGCGGCTGAGATATTGATGCAAAACTGGGACATTGCCCTTGAAGAGCTGAATCGTTTGAAGGAAATAATTGACTCAAAGAGTTTTACATCACCTATGAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAACCATGACAATGGCAGAACACAGATTATTGATCTGTTTAATCAGGACAAGTATCTAAATGCTATTCAAACTAGTGCTCCACACCTTTTGCGATACTTGGCCACAGCATTCATTATCAACAAGCGCAGGAGACCTCAATTCAAAGATTTCATAAAGGTTATTCAACAAGAGCAGCATTCATATAAAGACCCCGTCACTGAATTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGGGCACAACAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGCTAAGCAAGTTGAAGAAGGCAACTTTTCTACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCCAGGCTATTTATCTTTGAGACATACTGCAGAATACACCAACGGATTGACATGGGAGTTCTGGCGGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATCGTGAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCAAAAACCGGAACTGTTATCATGGAACCCAATCATCCTAATGTGTATGAGCAGCTTATTGACCATACCAAGGCACTTTCAGGGCGTACTTACAAGTTAGTCAGTCAACTTCTGGAGCATGCACAAGCACAGACAGCTCGATGA 1368 0.4481 MSLGFRTLPLWSRAACLPMANYDLTPRIAPNLDRHLVFPLLEFLQERHLYENDQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEEAAAPLVAFLQNPSAVQDLKADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFTSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIINKRRRPQFKDFIKVIQQEQHSYKDPVTEFLACVYVNYDFDGAQQKMRECEEVILNDPFLAKQVEEGNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSKTGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVSQLLEHAQAQTAR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2309 455 Gene3D - 242 451 - -
Glsi02g2309 455 SUPERFAMILY "Winged helix" DNA-binding domain 350 421 IPR036390 -
Glsi02g2309 455 CDD eIF3E 21 447 IPR016650 GO:0003743|GO:0005737|GO:0005852
Glsi02g2309 455 Pfam eIF3 subunit 6 N terminal domain 23 155 IPR019010 -
Glsi02g2309 455 ProSiteProfiles PCI domain profile. 237 421 IPR000717 -
Glsi02g2309 455 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 20 447 IPR016650 GO:0003743|GO:0005737|GO:0005852
Glsi02g2309 455 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 350 434 IPR000717 -
Glsi02g2309 455 FunFam Eukaryotic translation initiation factor 3 subunit E 246 451 - -
Glsi02g2309 455 PIRSF Transl_init_eIF3e 18 455 IPR016650 GO:0003743|GO:0005737|GO:0005852
Glsi02g2309 455 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 19 453 IPR016650 GO:0003743|GO:0005737|GO:0005852
Glsi02g2309 455 Pfam PCI domain 303 417 IPR000717 -
Glsi02g2309 455 SUPERFAMILY TPR-like 138 211 IPR011990 GO:0005515
Glsi02g2309 455 SMART eIF3_N_2 23 155 IPR019010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2309 Glsi-ChrGlsi02 73427984 73431718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2309 21 455 Eukaryotic Initiation Factors Gene Family AT3G57290 86.667 0.0 809