Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2299 ATGAAGGAAAAAATATATATTGTGAAATATTTGAATTGTAAGAGCTGTTACAAGTGTTGTAACTGCGAGATTACAGTTGAGGCAAAAAACTTCACCTTGGCAGAAGATGTAGCTACGAATAATAAAAATGATTCGAATATTAAGCCCGAAGATAGAGAGCATGAGTTCGTGCTTGTTAATCCTAAAGATGTTGATGGTATTAGCAGATCGTACCTGCAGGAAGTATTGCAGATGTATATGACAGAACTACCTGGAATGAATTATGCTGCAAATACTGGAAAAGAATCAAAGTTTCTTGAAAGATGTATAAATAATGGGAAATATCGTACACTGCTTCTGAAATCTGGTTCTGTTGGAAATTCTGGAAAGGTTATAGCTGCAATTACATATCAAATAGTCCCTGCAGACACAGAGTATGCAGAGATCCCACTTGCAGCTGTTACTGCAATCTATCAGCGGAAGGGTCTTGGTCATCTATTGTTTCTAGAGCTACGGAAGAGACTTCAAAATGTTGGTGTTCGTTCAATTTTCTGCTGGGGAGACAAAGAATCTGAAGGCTTTTGGCTTAAACAGGGCTTTATATCAATAGCAGAGGTGGACACTAAAGGCAGAGCCCGCAAGTTACCTATAAAGGCTGATATTCGTAAAGCATTATGCTTTCCTGGTGGTTCAACCCTCATGGTTTGCCATCTAAGGATGGAAATCTTAGCTTATGCTGCTAGCTCTATAAAGTCTCTTCCCTCACAGATTCGTCAAAATTCCTTGATATTTGCCAATGCTGAAAATGATCAGCTTAAATTTACAGGACAGTTACACATTGATTTGAACTTTTCAAATAAATCTACCAATAGAACAGAAAGTACAGAGAATGGTCATCCTGAAGCTTCGGCGAAAGATGGATTTCCAAGAGAATATGATAAATTGAGTGATAGTAACGCACTGGCCAGTGGTGCAGAACTTTCTAATGGAATTGATGCTGAAATGAAGCATTGTTCTAATTCTACAACAGGTGCGAAGAGGACTTGGGAAGCCTCTTTGTCCTCATTAAAGTCAAAAAGAGTGAAGGGTAGCCACATAGTTGACTGTAAATCAGATTCTAGCTGGGATTTTGTCTCAGAGGCTGATAGGACCGATTCTTGTTTTGTGGGATGCTCATGGGGTGCTTCAAGAGGAAAAAGTCCAGTGGAACTTCCATGTGATGATTCTTTGATCATTAGAGAAAATAATTCTGAAACACTTGAAGGGGATTATTTGCATTCAGAAGCTCTTATCAACAATGAACTGCCATCAACTAATTATTGCTTTAGAATTATGTTGATGAACATTTCTGATGATGCTAAGAAAACACACCTTATAAAGGTGATTGAAGACCTTGGTGGCACAGTTATCTCTGATGGAAGCATGACCACACATGTTATCACAGGCAAAGTGAGGAAAACTTTGAATTTCTGCACTGCCCTTTGTTCAGGGGCTTGGGTGGTCTCATCAGGTTGGTTAAAAGAAAGCTTTCGCGAAGGCAAATTTGTGGATGAATTTCCTTACATAGTAAATGATAAGGATTATCTATTGAAGTACAGATCTGATTTAAAAAGTGCAGTTCTCCGAGCAAAAGCCAGCCCTCAAGCTTTGCTCAAGGGGTATAATGTATGTATTGCCGCTCATGTTCACCCTCCTGCTAAAACACTGTCAGCCATTGTGAGGTCTGCCGGTGGCAATGTTATTTGTGGACTTGAGAAAGTAAATGAAGCATCGACAACAATCCTTGTGACGTGTGAAGAAGATATGGAAGAAGCAATGATAGCTGCAAAGAAAGGGATACGGACTTTCAGTAGTGAGTGGTTTATGAACTGTGTCATGAGACAGGAACTTGACTTGGAGGCCTCCCAATTTGCAGAGTCCTTATAA 1905 0.3953 MKEKIYIVKYLNCKSCYKCCNCEITVEAKNFTLAEDVATNNKNDSNIKPEDREHEFVLVNPKDVDGISRSYLQEVLQMYMTELPGMNYAANTGKESKFLERCINNGKYRTLLLKSGSVGNSGKVIAAITYQIVPADTEYAEIPLAAVTAIYQRKGLGHLLFLELRKRLQNVGVRSIFCWGDKESEGFWLKQGFISIAEVDTKGRARKLPIKADIRKALCFPGGSTLMVCHLRMEILAYAASSIKSLPSQIRQNSLIFANAENDQLKFTGQLHIDLNFSNKSTNRTESTENGHPEASAKDGFPREYDKLSDSNALASGAELSNGIDAEMKHCSNSTTGAKRTWEASLSSLKSKRVKGSHIVDCKSDSSWDFVSEADRTDSCFVGCSWGASRGKSPVELPCDDSLIIRENNSETLEGDYLHSEALINNELPSTNYCFRIMLMNISDDAKKTHLIKVIEDLGGTVISDGSMTTHVITGKVRKTLNFCTALCSGAWVVSSGWLKESFREGKFVDEFPYIVNDKDYLLKYRSDLKSAVLRAKASPQALLKGYNVCIAAHVHPPAKTLSAIVRSAGGNVICGLEKVNEASTTILVTCEEDMEEAMIAAKKGIRTFSSEWFMNCVMRQELDLEASQFAESL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2299 634 ProSiteProfiles BRCT domain profile. 437 516 IPR001357 -
Glsi02g2299 634 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 428 515 IPR001357 -
Glsi02g2299 634 SUPERFAMILY BRCT domain 535 623 IPR036420 -
Glsi02g2299 634 Pfam Acetyltransferase (GNAT) family 120 193 IPR000182 GO:0016747
Glsi02g2299 634 SUPERFAMILY BRCT domain 436 518 IPR036420 -
Glsi02g2299 634 CDD BRCT_PAXIP1_rpt6_like 543 624 - -
Glsi02g2299 634 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 58 200 IPR016181 -
Glsi02g2299 634 Gene3D BRCT domain 541 633 IPR036420 -
Glsi02g2299 634 CDD NAT_SF 120 179 - -
Glsi02g2299 634 Gene3D - 53 218 - -
Glsi02g2299 634 Gene3D BRCT domain 425 540 IPR036420 -
Glsi02g2299 634 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 62 215 IPR000182 GO:0016747
Glsi02g2299 634 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 50 216 - -
Glsi02g2299 634 ProSiteProfiles BRCT domain profile. 539 623 IPR001357 -
Glsi02g2299 634 SMART BRCT_7 427 506 IPR001357 -
Glsi02g2299 634 SMART BRCT_7 541 621 IPR001357 -
Glsi02g2299 634 MobiDBLite consensus disorder prediction 280 302 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Glsi02g2299 RTT107_BRCT_5 2.2e-07 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2299 02 73344431 73354775 Glsi02g2299 02 73344431 73354775 ECH