Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2245 ATGTCTTTGGACGACTCTCTAAGATCTCTATCTCTGGACTACCTGAACCTGCTCATCAATGGTCAAGCCTTCAGCGACGTCACCTTCAGCGTGGAGGGTCGCCTAGTCCACGCTCACCGCTGCATCCTGGCAGCCCGAAGCCTGTTCTTCCGGAAATTCTTCTGCGGCCCAGACCCGCCATCGGGGCTCGACCCCGCAGGCTCCCGGGTTAGCTCAATCTCGTCTGCCTCAAGACCTGGGGTCATTCCGGTTAACTCAGTGGGCTATGAGGTATTCCTGCTTCTGCTTCAATTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCAAGGCCTGATTGCGGCGAGAGAGGCTGTTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCTCTTGATACTCTTGCTGCCGCTAGATCCTTTGGCGTCGAACAGCTTGCATTGCTCACTCAGAAACAATTAGCCAGCATGGTAGAGAAGGCCTCAATTGAAGATGTAATGAAAGTACTTCTGGCTTCAAGAAAACAAGACATGCACCAGCTCTGGACCACTTGTTCCCACCTTGTTGCCAAGTCCGGTCTTCCCCCTGAAGTGCTCGCTAAACACCTCCCCATTGATGTTGTGGCTAAAATAGAAGAGCTTCGTCTCAAAACCTCCCTCGCTCGCCGCTCCCTAATGCCCCACTCCCATCCCCACCCTCACCACGATCTCGGCGCCGCCGCAGACCTCGAGGACCAGAAAATTCGTCGAATGAGAAGAGCACTTGACTCCTCCGATGTGGAACTCGTCAAGCTGATGGTAATGGGAGAAGGCCTAAATCTAGACGAAGCATTAGCCTTACACTATGCCGTAGAGAATTGTAGCCGAGAAGTTGTGAAAGCCTTGCTTGAGCTGGGTGCAGCTGATGTTAACTACCCTGCGGGGCCCGCCGCTAAAACCCCACTTCACATTGCCGCCGAAATGGTCTCGCCGGACATGGTGGCGGTCCTCCTCGACCACCATGCCGACCCTAATGTCCGAACCGTGGATGGGGTCACTCCTCTTGACATCCTCAGAACCCTAACTTCTGATTTCCTCTTCAAAGGGGCTGTCCCTGGACTCACACATATTGAACCCAACAAGCTCAGATTGTGCTTAGAACTGGTTCAATCCGCAGCTCTTGTGCTCTCCCGCGAAGAAGGAAATGCAAATCCTCCTTCTTCAACACCAATATATCCCCCCATGAGCGAAGACCATAGCAGCAGTAGCAGCGGCAACAACTTTGCCAATCTCAAGTTGGACACGAGGTTGGTTTATCTCAATCTGGGGGCGAGGGCGCCCGCCCAAATGGGTTCTAGATTGGATGGAGACGACGATAGCAGCCACAATAGCCGGAGGGAAGCCATGAACCGTCATGGGTCGCAAGGTGGATGTGACCCAACAATGTATCACCACTCTCATGACTTTTAG 1458 0.5343 MSLDDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGSRVSSISSASRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPDCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLARRSLMPHSHPHPHHDLGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAAKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPSSTPIYPPMSEDHSSSSSGNNFANLKLDTRLVYLNLGARAPAQMGSRLDGDDDSSHNSRREAMNRHGSQGGCDPTMYHHSHDF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2245 485 Gene3D - 244 361 IPR036770 -
Glsi02g2245 485 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Glsi02g2245 485 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 484 IPR044284 GO:0099402
Glsi02g2245 485 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Glsi02g2245 485 MobiDBLite consensus disorder prediction 451 465 - -
Glsi02g2245 485 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Glsi02g2245 485 SMART BTB_4 25 161 IPR000210 GO:0005515
Glsi02g2245 485 FunFam regulatory protein NPR5 isoform X2 244 361 - -
Glsi02g2245 485 CDD BTB_POZ_NPR_plant 8 161 - -
Glsi02g2245 485 Pfam Domain of unknown function (DUF3420) 196 255 IPR024228 -
Glsi02g2245 485 MobiDBLite consensus disorder prediction 395 423 - -
Glsi02g2245 485 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Glsi02g2245 485 Gene3D Potassium Channel Kv1.1; Chain A 5 194 IPR011333 -
Glsi02g2245 485 MobiDBLite consensus disorder prediction 409 423 - -
Glsi02g2245 485 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Glsi02g2245 485 MobiDBLite consensus disorder prediction 445 485 - -
Glsi02g2245 485 SUPERFAMILY POZ domain 7 159 IPR011333 -
Glsi02g2245 485 SMART ANK_2a 313 342 IPR002110 GO:0005515
Glsi02g2245 485 SMART ANK_2a 278 308 IPR002110 GO:0005515
Glsi02g2245 485 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Glsi02g2245 485 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2245 Glsi-ChrGlsi02 72925310 72927634 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi02g2245 BTB 1.4e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2245 02 72925310 72927634 Glsi11g1418 11 8892151 8893140 CCT
Glsi02g2245 02 72925310 72927634 Glsi02g2245 02 72925310 72927634 ECH