Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2230 ATGGGACTCTGTCATGGAAAACCTATTGAAATCTCACAAACTCAAGGAGAAAACCCGATATTTCCTGGTGACAAAGACGGACTGCCATGTTCCCGGCCAAGCAAATCCTCAAAATTCCCCTTTTACAGCCCAAGTCCCTTGCCTAGTCTGTTTAAGAACTCACCAGCAAATTCCAGTGTGAGTTCGACTCCTTTGCGCATTTTCAAGCGCCCATTTCCTCCTCCTTCGCCGGCGAAGCACATTCGGGCATTACTTGCTCGGCGGCATGGTTCTGTCAAGCCAAATGAGGCCTCAATCCCTGAAGGAGGTGAATGCGAGGTTGGGTTGGATAAGATTTTCGGGTTTTCGAAGCAGTTCTTAGCTCATTACGAGCTTGGAGAAGAGGTGGGACGTGGCCATTTCGGGTATACTTGTTCGGCCAAGGGAAAGAAAGGCAGTTTGAAGGGGCAGGAGGTGGCTGTCAAAGTCATTCCAAAATCGAAGATGACAACAGCGATTGCCATTGAGGATGTACGGAGAGAAGTGAAGATATTGCGGGTTCTAACAGGACATAAGAACCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAACGTATATATAGTTATGGAGTTATGCCAAGGAGGTGAACTGCTAGATAGGATTCTTTCGAGGGGTGGAAAATACTCAGAAGAGGATGCCAAGGTTATCATGATTCAGATATTAAGTGTGGTAGCCTTCTGTCATCTGCAGGGTGTGGTTCATCGTGATCTCAAGCCTGAGAATTTTCTTTTTACTTCTAAGGATGAAAACTCCACGTTGAAGGCCATTGATTTTGGACTGTCTGACTATGTGAAGCCAGATGATAGATTGAATGATATTGTGGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGACATGTGGAGCATAGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCCCGGACAGAATCTGGCATATTTCGAGCTGTCCTGAAGACGGATCCAAGTTTTGATGATGCTCCTTGGCCTTCTTTATCAGCTGATGCTATCGATTTTGTAAGGAGTCTTTTGAATAAGGATTACCGTAAAAGATTAACTGCAGCTCAGGCTCTCTGTCATCCATGGCTGGCTAATCATCGTGATGATTTGAAGATACCTTTGGATATGATAATCCACAAGCTTGTTAGAGCTTACATATGCTCATCCTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGAGCAATTTACTCTGCTAGGGCCAAACAAAAGTGGATTTGTCTCCATGCAGAACTTTAAGATGGCTATTTTAAGGAGCTCCACTGATGCCTTGAAGGATTCACGGGTCTTAGATTATGTGAACATGGTTAGTTCTATCCAATATAGAAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATCGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGGCTTGGCCCATCAGTACCTGTTCATGTGGTACTCCAAGATTGGATAAGACACACAGATGGGAAGCTTAGTTTCTTAGGGTTTGTGAGGCTTCTGCATGGGCCTTCTTCCCGCACATTTCAGAAGGCTTGA 1734 0.4441 MGLCHGKPIEISQTQGENPIFPGDKDGLPCSRPSKSSKFPFYSPSPLPSLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGGECEVGLDKIFGFSKQFLAHYELGEEVGRGHFGYTCSAKGKKGSLKGQEVAVKVIPKSKMTTAIAIEDVRREVKILRVLTGHKNLVQFYEAYEDDDNVYIVMELCQGGELLDRILSRGGKYSEEDAKVIMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDDRLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKTDPSFDDAPWPSLSADAIDFVRSLLNKDYRKRLTAAQALCHPWLANHRDDLKIPLDMIIHKLVRAYICSSSLRKSALGALAKTLTVAQLAYLREQFTLLGPNKSGFVSMQNFKMAILRSSTDALKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYELFEKDGNRPIMIEELASELGLGPSVPVHVVLQDWIRHTDGKLSFLGFVRLLHGPSSRTFQKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2230 577 SUPERFAMILY EF-hand 415 568 IPR011992 -
Glsi02g2230 577 FunFam Calcium-dependent protein kinase SK5 295 389 - -
Glsi02g2230 577 Gene3D - 407 568 - -
Glsi02g2230 577 Gene3D Transferase(Phosphotransferase) domain 1 213 406 - -
Glsi02g2230 577 MobiDBLite consensus disorder prediction 1 36 - -
Glsi02g2230 577 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2230 577 SUPERFAMILY Protein kinase-like (PK-like) 116 416 IPR011009 -
Glsi02g2230 577 FunFam CDPK-related kinase 3 115 287 - -
Glsi02g2230 577 CDD STKc_CAMK 122 384 - -
Glsi02g2230 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Glsi02g2230 577 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Glsi02g2230 577 SMART serkin_6 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2230 577 FunFam CDPK-related kinase 1 116 211 - -
Glsi02g2230 577 ProSiteProfiles Protein kinase domain profile. 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2230 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 553 - -
Glsi02g2230 577 FunFam CDPK-related kinase 1 397 569 - -
Glsi02g2230 577 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2230 Glsi-ChrGlsi02 72821221 72825616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2230 1 575 EF-hand Containing Proteins AT3G50530 67.036 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi02g2230 Pkinase 1.1e-70 CL0016