Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2228 ATGCAGCAGCAGCAGCAGATGGACAACTCTGATCTCTACCAATTCCTCGCCGGCAACCCCTCCTTTTTCAATTCTACACCGTACGGCCTGCCACCAACTACTACGATGCAGAGCTTCTGTAGTAGTTCCTCCTATTACCCTTTGGACTCTTCCGAAATTACCGATACCCCACCCCAGGATAGAGCCCTCGCTGCTTTGAACAATCACAAAGAGGCTGAGAAGCGCAGGAGGGAGAGGATCAATTCCCACCTCGATAAGCTCCGGACTCTTCTTCCTTGTAATTCCAAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCCAACGAGTGAGAGAGCTAAAACAGCAAACTTCTGAAATCACGGAACTGGAAACTGTTCCTTCCGAAACGGATGAAATCACAGTGTTGTCCAGCAGCGGCGACTGTGCCGGCGATGGCAGAATCATATTCAAAGCCTCTCTGTGCTGTGAAGACCGCTCCGATCTCATACCCGACCTCATTGAAATCCTAAAGTCCCTGCATCTGAAAACCCTCAAAGCAGAAATGGCAACACTGGGAGGCAGAACCCGGAACGTTCTTATTGTCGCCGCGGATAAAGACCACAGCATTGAATCAATCCATTTCCTGCAGAATGCATTGAAATCCTTGCTAGAACGCTCAAATTCTAGCGAAAGATCCAAACGGCGCCGCGTATTAGACCGTAAATTGATTGTTTAA 717 0.4868 MQQQQQMDNSDLYQFLAGNPSFFNSTPYGLPPTTTMQSFCSSSSYYPLDSSEITDTPPQDRALAALNNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTSEITELETVPSETDEITVLSSSGDCAGDGRIIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAADKDHSIESIHFLQNALKSLLERSNSSERSKRRRVLDRKLIV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2228 238 Gene3D - 60 125 IPR036638 GO:0046983
Glsi02g2228 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Glsi02g2228 238 SMART finulus 70 119 IPR011598 GO:0046983
Glsi02g2228 238 FunFam transcription factor bHLH30 59 122 - -
Glsi02g2228 238 CDD bHLH_AtAIG1_like 59 135 - -
Glsi02g2228 238 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Glsi02g2228 238 PANTHER TRANSCRIPTION FACTOR BHLH30 35 233 IPR045847 GO:0003700|GO:0006355
Glsi02g2228 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2228 Glsi-ChrGlsi02 72808801 72810114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2228 12 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.493 5.50e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g2228 HLH 1.7e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2228 02 72808801 72810114 Glsi02g2228 02 72808801 72810114 ECH