Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2213 ATGAAGTCTGGGTCACTAGATTACTGGAGGAGCTACTTTCGAACTGCAAGTTCTGATATATTCGATATAATTGACCATGCGATCATGGTGGCCGCTTCCGATTGTCCGAAGGAGTTTAGATTGCGTAGAGATGGAATTGCAGAACGGTTGTTCTCCTGTAGAACGACTCGTTGTTTGGGGTGTGACCGAGTGGAGTTGGCGGTCTCCGGTGATGAGGAGGAAGATGGAGGTTGTAAGAGTGGTTTTGATAGAGATGGTGCTGAACTTGAAGCAGGTGCTAGTAAAGAGAGCAAGGTCAATAGTAGCATAGACGATCATGGAGAGATGAACATGAACCACGTTAGCAATTATAGCTTTGGAGAAGCTGAAGCATTGACTGATGAGATTGAAGAAGAGTCTCTATATGTTGGGGAGGTTTTGAGGATCAGAGAGGTTCTCTGTAACAGCAAAGAAGAGTCTGATTCGGTGTTATTTGAGTCGTTAAGGAGGCTCCAGCTGATGGAACTGACTGTGGATCTTCTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAGGAGATTCGGCAACTTGCACGGACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCTACTGCAACTATTGCGGGTTCAGAAGGTACACCAGATTCAGTTAATCCATCTGTTGTTGATGAAGAGGAAGTGGAAGAGGAAGAGGAAGGGCTTCCATCGCCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCTTCAATGGAACTATCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAATTCATCAAGAACCGGGAAAATGGAAGAAAACCATCCTTTGGCAATCAAAACATAGTAAAGAGGAAACAAGAGGCTCCCAACGGGGCAAACATTATTGCCAAAGACAGCAAGAGTCAGCAAGCAAAGCAAAATGAGGCTGTTGAGAAGGTAAATAAATCCGTGACGGCTGATTCTGGTCCTGGCAGACCATTAAAATCAAGCATGCAGCAAAGAGGCAATATGGTGCCAAAGATGCAGCAAAAAAAAGACAAGGGTGGTATCCCAAAGAGGCCTCTTGTTGGTCAGCAAAATAAATCCAAGTGTTCGGATGAGGCTGCAGTCCAAGTGAAGCTAGAAGCCACCAAGAGGAAACTTCAGGAGCGTTATCAACAAGCAGAAAATGCCAAGAGGAAGCGGACAATACAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGATGGGACACAGAAATCCACATACCAAACCTATGAGCCATAACAGGCACTGGGCTCAAGGACGAAGGTAG 1359 0.4577 MKSGSLDYWRSYFRTASSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRTTRCLGCDRVELAVSGDEEEDGGCKSGFDRDGAELEAGASKESKVNSSIDDHGEMNMNHVSNYSFGEAEALTDEIEEESLYVGEVLRIREVLCNSKEESDSVLFESLRRLQLMELTVDLLKATEIGKAVNPFRKHGSKEIRQLARTLIDGWKEMVDEWVKATATIAGSEGTPDSVNPSVVDEEEVEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQSGEFIKNRENGRKPSFGNQNIVKRKQEAPNGANIIAKDSKSQQAKQNEAVEKVNKSVTADSGPGRPLKSSMQQRGNMVPKMQQKKDKGGIPKRPLVGQQNKSKCSDEAAVQVKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGMGHRNPHTKPMSHNRHWAQGRR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2213 452 MobiDBLite consensus disorder prediction 274 386 - -
Glsi02g2213 452 SMART TFS2_5 136 211 IPR003617 GO:0005634
Glsi02g2213 452 ProSiteProfiles TFIIS N-terminal domain profile. 137 212 IPR017923 -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 316 335 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 219 251 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 344 360 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 425 452 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 277 291 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 293 307 - -
Glsi02g2213 452 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 222 IPR035441 -
Glsi02g2213 452 Coils Coil 392 419 - -
Glsi02g2213 452 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 220 IPR035441 -
Glsi02g2213 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 440 IPR044805 -
Glsi02g2213 452 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 233 248 - -
Glsi02g2213 452 CDD TFIIS_I 138 210 - -
Glsi02g2213 452 MobiDBLite consensus disorder prediction 438 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2213 Glsi-ChrGlsi02 72720360 72723182 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi02g2213 Med26 1.6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2213 02 72720360 72723182 Glsi02g2213 02 72720360 72723182 ECH