Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2209 ATGGCTTCAAGACCCGTCGTTCCACAGCAAGCCAGAGGTGATGCAGTCGTTGGGGGAGGTAAGCAGCAGAAGAAGAATGCAGCGGCCGAGGGAAGAAACCGCAGAGCACTGGGCGACATTGGAAATATGGTGACTGTTAGAGGAATAGAAGTCAAGCCCAACCGCCCCATCACGAGGAGCTTCTGTGCCCAATTACTTGCTAATGCACAAGCTGCAGCAGCCGCAGAAAACAACAAGAAACAGGCTTGTGCTAATGTGGTTGGACCTCCTCCTGTTCCTGATGGAGTTGCAGCTGCTAAAAGAGTCGCACCAAAGCCGGCTCAGAAGAAAGTCACTGTTAAAGCAAAGCCTGAGGAAGTCATTGAAATAAGCCCAGACGAAGAGGTTAAGAAAGAGAAGTCTGTGAACAAGAAAAAGGAAGGAGATGGAAACTCGAGGAAGAAATCACATACTCTTACTTCAGTACTCACAGCTCGAAGCAAGGCAGCATGTGGTGTGACTAACAAACCAAAGGAGCAGATTGTTGACATTGACGCAGCTGACACTGGTAATGAGCTTGCTGCTGTGGAATATATTGAAGACATTTACAAGTTTTATAAACTGGTGGAGCATGAGAGCCGTCCTCACGATTACATGGACTCACAACCTGAAGTTAATGAGAGGATGAGAGCAATATTGGTTGATTGGCTGATAGAAGTCCATAGCAAGTTTGACCTTTCGCTGGAAACTCTTTATCTGACTGTCAATATAGTTGATCGGTTCCTTGCAATCAGGACTGTGCCAAGGAGGGAACTGCAATTGGTAGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTCTGCCTCTCAGATAGAGCTTACACTGATCAACAGATATTAGTCATGGAGAAAATCATACTAGGCAAGCTGGAATGGACTTTGACTGTTCCTACACCTTACGTTTTCCTTGTTCGTTTCATCAAGGCATCAATTCCTGATCAGGAGTTGGAAAACATGGTCCATTTTCTTTCCCAGTTGGGAATGATGAACTATGCCACAATAATGTATTGCCCATCAATGGTTGCGGCCTCAGCAGTCTTTGCTGCTCGATGCACTCTAAACAAGAGCCCCGCTTGGAACGAGACACTTAAGCTTCACACTGGATACTCAGAAGAACAACTGATGGATTGTGCTAGACTACTGGTGAACTTCCACTCCATGGCTGGAAACGGAAAGCTTCAGGTTGTGTACAGAAAGTACTCGGAACCCCAGAGAGGAGCCGTCGCATTGCTTCCACCGGCTAAAAATCTTCTGCATGCAGACTCTGCGGCTAGAAGAGGCATCATTGCCAAAGCTGCTGATTCGAGATTCTGGAACGAGATTGCTGGTGTGTGGGCCTGGTTTCCCAAAATGTGTAGGGGTGGAAGAGAAGATACGTTGCAATGGATTCTGAATGACAATGGGTCCTTCTCGGTTGCTAGTGCCTACAGTACTTTTGGAGAGAATACAGGTCAGATGAAGCGTAAGGTTTGGGATGATATTTGGGGTTTAAAGGTTCTCCAAATAGTTAAGAGTTTTCATGTGGCGAGTACCGTTCCAACTGGCAAGGGAATGATGGGAGGTGTACAGTATGCAAAGCTCAGGGAGGTTACAATCGAAAGGAATGGAAGCTGGAGCTCTCCAATGAGTGAGCATAGACTTATTCTGTGGATGCCTTCGAAGACAAAGAAGCATACCAAGTCACAGTCAAGGCTATCGACTTCTGAAGTGGCCACACCTCTTACACCATGGACGCCCAACAAAGATTCTGAAGTTAGTGAAGAAGAACTTATCTTTTATTGTGAAGAAGCTTCAAGAAAATTTCCACATTTCATTGGCAAATCTGCTTTCATTGGTGATGTCAGTGATGTTGAGCCTAAATCCAAAGGCTGTAAAATTTGGCTGTCGGAGTCTTCCATGGTTTCTTCTTCGCTTGCCCCTGGTTCCATTGTGTCGGTGTCAATTGCTTCTTCAAGAAAGAAAAACTTGGAATTGCATAGCTTTCCTCTCAAATCATTAGTAAAAGAATGCGCTCAATGCTATGGGTTGGATACTGGGAAGATATCAAATGATGACCCAGGAAATTACTTTGCTTTGGCAACAGTTTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGGCTGTCCTCAGATCTTTCTTATACCATGGGTTGTCCTACTTTGGGCACACTTGTGTTTGTTTATCTAGTGCAGAATCAATCCCTATCTCGTCTTGCAAATGGGAACAATGAACCACATTCTTCAAAAGATAATAGTCTGGTGGTATATAATTGCAAGGAATTGCATCTTCAGTTGGTTTCTCCGAAGAATGGATTACCTTTGAAAATTAATAACATTTCCTCAATGAACTTTTCAGCAGAAAAGTCCCATGTACGAACTGAGAATGAAAGAGTTGCTTCTCCTAGAACACCTAATGTATCAAAGTTTTCTAATTCTAGCAAGTTATCTTCTCCACTATTTGAAGATTCATCTTCTAGTGTGCCTGATCAAAAGAATCAATCATTGGTTTCATTTGATGTTAGGGACGCATTGGTGGATGAAAGTGCCAAAAAACTACTGCAGACATGTGCAGCTTGTTGGTTATATTCCCGTTGCTTACTGCTAGGGAATCTTGTGACTATCCAAATATTTTCAGAGTTGTGCATTTTCCAAGTAATAGGAGCTAAAAAGGTGTCATTAGACAGATCTAGTCATTATTCATCGAATAGAAGTAATAATTTGTACCCTGAGGATTCTGATATTGCGGAGGATATAAATCAGGCTATCATTGTCAACCGTGAAACAAAGGTATCTTTATCTTTGCCATCAAATGTGGCATCTGAAGAGCTGATTCAAAGAGATTTGTCTGATGAGGAACTCAAACAGAAAGGCGCTAATGCTAGCTTACCCATTAATATTTCAAAATTGGGTGGTCTATTTAAAGAATATGCAGTTTTAAAGGGTATAATTTTGTCCTCAGTAAAAGATGCTCTATCGAGTTTTGGTTTAAGAACTACAAAAGGGGTCCTTCTTCATGGTCCACCTGGAACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGACGTGGGGATTAATCTTTTCCCAATAAATGGACCTGAAATTGTAAGCCAATATTACGGTGAAAGTGAGCAAGCGCTGCTCGAGGTTTTTGATTCGGCCATTCAAGCTGCGCCTGCTGTGGTATTCATTGATGAGTTAGATGCTATTGCCCCTGCAAGGAAAGATGGTGGTGACGAGCTATCTCAGAGAATGGTTGCAACCTTATTGAATCTGATGGATGGAATTAGTAGAACCGAAGGACTGCTTGTTATTGCTGCCACCAACAGGCCTGACAATATTGAGCCAGCTCTGAGGCGGCCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTACCATCACCGAACCAACGGTTGGATATGTTGCTCACTCTTCTCAGTGAAGTAGATCACTCTCTTTCTGAGTTACAAATAGAACACCTTGCCACAGTCACACATGGTTTTGTGGGTGCTGATCTTGCTGCTCTTTGCAATGAAGCAGCCTTCATTTGTCTTAGACGTTATGCTAATTTTAAGAAGGCGTGTGATGCTTACTGCAATAATGGAACATCCACTCCAGATAACAGCTGTTCTGATGATATGACAGAGCTACCTGCTTTGCTGAATGGTACAACAAACTCAAGAGGTCATTCTGGTCATGTATCTTCATCTGTCTTGGATTTATCAGTGGCCTCCAACTTTGTACAACTTTCTAGCAATATGGGAACAACTTATGAGACTATGGAAATAATTCCTGATACCAGTGAAGAGCATATTTTGAAAGTAACTCATGAAGATTTTCAAAAGGCAAGAATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTGGAGGTTCCAAAGATTAAGTGGGAAGATGTTGGCGGCCAAAAGGAGGTTAAAGCCCAATTGATGGAGGCAGTTGAATGGCCCCAGAAGCACCATGATGCATTCAAGCGTATTGGAACTCACCCTCCAAAAGGTGTGTTGCTGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTAAATTTTCTGGCTGTCAAGGGTCCAGAACTCTTCAGCAAATGGGTCGGTGAATCTGAGAAGGCTGTCAAATCTTTGTTCGCAAAAGCAAGGGCCAATGCCCCATCAATTGTATTTTTTGATGAAATAGATGGCCTTGCAGTCACTCGTGGGAAGGAAAGTGATGGTGTTTCGGTATCAGATAGAGTCATGAGCCAACTTCTTGTTGAACTGGACGGTCTGCATCAGAGGGTTAATGTCACTGTCATTGCTGCTACAAATAGACCGGACAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGATCGTCTGCTGTATGTGGGACCTCCAAATGAGAGAGACAGAGAAGAGATATTTTGCATCCATTTGCATAAAATTCCATGTGGTTCTGATGTTAGCATAAAAGAACTGGCTTCTCTTACAGAAGGTTGTACCGGGGCTGATATATCACTAATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTAATGCTTCAGTAATAACAATGAAGCATTTGAAGACGGCAATTAAACAGGTCCAGCCATCAAAGATTCAGACTTACCAACAGCTGTCAGCTAAATTTCAGAGGGCTGTTCACTCGTGTGATATAAATCATGAGTTCAGTCAGATGCAGTGCCCAAGCAGATCTACTTGGTTCTCCATTTGGAAGTTCATAAAATCTTTCAAATTGTTCCTCTATCAGATTCCAGCAGCCATTTTCTATTTCAAGACTGCTCCGAGTGGTTAG 4923 0.4321 MASRPVVPQQARGDAVVGGGKQQKKNAAAEGRNRRALGDIGNMVTVRGIEVKPNRPITRSFCAQLLANAQAAAAAENNKKQACANVVGPPPVPDGVAAAKRVAPKPAQKKVTVKAKPEEVIEISPDEEVKKEKSVNKKKEGDGNSRKKSHTLTSVLTARSKAACGVTNKPKEQIVDIDAADTGNELAAVEYIEDIYKFYKLVEHESRPHDYMDSQPEVNERMRAILVDWLIEVHSKFDLSLETLYLTVNIVDRFLAIRTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTDQQILVMEKIILGKLEWTLTVPTPYVFLVRFIKASIPDQELENMVHFLSQLGMMNYATIMYCPSMVAASAVFAARCTLNKSPAWNETLKLHTGYSEEQLMDCARLLVNFHSMAGNGKLQVVYRKYSEPQRGAVALLPPAKNLLHADSAARRGIIAKAADSRFWNEIAGVWAWFPKMCRGGREDTLQWILNDNGSFSVASAYSTFGENTGQMKRKVWDDIWGLKVLQIVKSFHVASTVPTGKGMMGGVQYAKLREVTIERNGSWSSPMSEHRLILWMPSKTKKHTKSQSRLSTSEVATPLTPWTPNKDSEVSEEELIFYCEEASRKFPHFIGKSAFIGDVSDVEPKSKGCKIWLSESSMVSSSLAPGSIVSVSIASSRKKNLELHSFPLKSLVKECAQCYGLDTGKISNDDPGNYFALATVFPSSKVLKNGVRLSSDLSYTMGCPTLGTLVFVYLVQNQSLSRLANGNNEPHSSKDNSLVVYNCKELHLQLVSPKNGLPLKINNISSMNFSAEKSHVRTENERVASPRTPNVSKFSNSSKLSSPLFEDSSSSVPDQKNQSLVSFDVRDALVDESAKKLLQTCAACWLYSRCLLLGNLVTIQIFSELCIFQVIGAKKVSLDRSSHYSSNRSNNLYPEDSDIAEDINQAIIVNRETKVSLSLPSNVASEELIQRDLSDEELKQKGANASLPINISKLGGLFKEYAVLKGIILSSVKDALSSFGLRTTKGVLLHGPPGTGKTSLAQLCAHDVGINLFPINGPEIVSQYYGESEQALLEVFDSAIQAAPAVVFIDELDAIAPARKDGGDELSQRMVATLLNLMDGISRTEGLLVIAATNRPDNIEPALRRPGRFDKEIEIGVPSPNQRLDMLLTLLSEVDHSLSELQIEHLATVTHGFVGADLAALCNEAAFICLRRYANFKKACDAYCNNGTSTPDNSCSDDMTELPALLNGTTNSRGHSGHVSSSVLDLSVASNFVQLSSNMGTTYETMEIIPDTSEEHILKVTHEDFQKARMKIRPSAMREVILEVPKIKWEDVGGQKEVKAQLMEAVEWPQKHHDAFKRIGTHPPKGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIVFFDEIDGLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNERDREEIFCIHLHKIPCGSDVSIKELASLTEGCTGADISLICREAAVAAIEESLNASVITMKHLKTAIKQVQPSKIQTYQQLSAKFQRAVHSCDINHEFSQMQCPSRSTWFSIWKFIKSFKLFLYQIPAAIFYFKTAPSG 1640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2209 1640 Gene3D - 194 433 - -
Glsi02g2209 1640 FunFam Putative vesicular transport protein (CDC48) 977 1155 - -
Glsi02g2209 1640 Gene3D - 1156 1320 - -
Glsi02g2209 1640 FunFam G2/mitotic-specific cyclin-1 316 433 - -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 582 605 - -
Glsi02g2209 1640 FunFam calmodulin-interacting protein 111 isoform X1 1323 1498 - -
Glsi02g2209 1640 FunFam Calmodulin-interacting protein 111 1157 1326 - -
Glsi02g2209 1640 Gene3D - 1499 1569 - -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 124 147 - -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 588 605 - -
Glsi02g2209 1640 PANTHER AAA-FAMILY ATPASE 643 1587 - -
Glsi02g2209 1640 FunFam G2/mitotic-specific cyclin 207 315 - -
Glsi02g2209 1640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1214 IPR027417 -
Glsi02g2209 1640 SUPERFAMILY Cyclin-like 184 318 IPR036915 -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 124 150 - -
Glsi02g2209 1640 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Glsi02g2209 1640 CDD RecA-like_CDC48_r2-like 1337 1496 - -
Glsi02g2209 1640 Gene3D - 208 319 - -
Glsi02g2209 1640 Pfam Cyclin, N-terminal domain 194 318 IPR006671 -
Glsi02g2209 1640 CDD CYCLIN_AtCycB-like_rpt2 321 437 - -
Glsi02g2209 1640 SMART cyclin_7 228 312 IPR013763 -
Glsi02g2209 1640 SMART cyclin_7 325 407 IPR013763 -
Glsi02g2209 1640 Pfam ATPase family associated with various cellular activities (AAA) 1026 1155 IPR003959 GO:0005524|GO:0016887
Glsi02g2209 1640 Pfam ATPase family associated with various cellular activities (AAA) 1366 1497 IPR003959 GO:0005524|GO:0016887
Glsi02g2209 1640 Pfam AAA+ lid domain 1181 1211 IPR041569 -
Glsi02g2209 1640 Pfam AAA+ lid domain 1520 1565 IPR041569 -
Glsi02g2209 1640 Gene3D - 972 1155 IPR027417 -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 811 836 - -
Glsi02g2209 1640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1324 1576 IPR027417 -
Glsi02g2209 1640 CDD CYCLIN_AtCycB-like_rpt1 171 316 - -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 1 32 - -
Glsi02g2209 1640 ProSitePatterns AAA-protein family signature. 1468 1486 IPR003960 GO:0005524|GO:0016887
Glsi02g2209 1640 Pfam Cyclin, C-terminal domain 321 437 IPR004367 -
Glsi02g2209 1640 MobiDBLite consensus disorder prediction 822 836 - -
Glsi02g2209 1640 SMART Cyclin_C_2 321 438 IPR004367 -
Glsi02g2209 1640 FunFam spermatogenesis-associated protein 5-like protein 1 1499 1582 - -
Glsi02g2209 1640 SMART AAA_5 1362 1500 IPR003593 GO:0016887
Glsi02g2209 1640 SMART AAA_5 1022 1158 IPR003593 GO:0016887
Glsi02g2209 1640 Gene3D - 1323 1574 IPR027417 -
Glsi02g2209 1640 SUPERFAMILY Cyclin-like 320 439 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2209 Glsi-ChrGlsi02 72663346 72687388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2209 575 1626 Calmodulin-binding Proteins AT3G56690 56.742 0.0 1048