Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2197 ATGGGGATAGAGATTGTGGAGCCAAACACGTGCATTAGGGGTTGCTGCTCCAGCACATCTATTCCTCTGCATCTCCCTCCTTCCTCTTATACTCTTTTATCACCAATTGCCCGAGGGGCGGAGAGTGTTGTTTACGAAGGGAGTTTGGATGGCAACAAAGTCGCTGTGAAGAAACCCGTCTTGTCAACTTCAGAAGACATCAATAAGTTTCATAAAGAACTACAATTGCTATGCAAGCTAGATCACCCGGCACTAGCAACAATAATTGCTGCCCATGCAAAGCCGCCCAATTACCTATTTTTCTTCAAATTCTATGAATCTCCCAACCTTGCACAAAAGTTACACTTGGAAGAATGGACCCCGAGTATCAATCACGCGCTTATGATAACAATTCAGTTAGCCAAAGCTTTGCAATATCTACATAACCTTGGGATTGTACATAGAGATGTGAAACCGGAAAATATTCTTCTTGACAAAAATCTTTATCCACATCTCACAGATTTTGGTTTGGCAGAATACAAGAATGACCTTAAGAGAGTTTCTCTTGAGAATTGGAAGTCTTCTGGCAAACCTACTGGTGGATTTCATAAAAAAAATATGGTTGGAACTCTTATTTACATGGCACCTGAAATATTAAGAAAGGAGTTGCACACAGAAAAATCAGATGTCTACAGTTTTGGGATATCAATCAATGAACTCCTTACTGGTGTTGTACCATATACTGATCTTCATACAGAAGCACAGGCCCACACAGTGTTGGAGATGAACTATACTGAGCAGCAACTGACAGCAGCTGTTTGCAATGGGTTACGGCCAGTCCTTGCTGCTCAGGAGTTGGGTGTACCTTCAAGATTATTATCACTAATACAGAGATGCTGGGATGCAAATCCTGAAAACAGACTTTCCTTTGATGATATAGTTAAGGATCTTGAATCCATCATGGAGCACAGAAAGGATGTTGAAGATATACACCTCAGACCTTGTAACTTGCATGTTGATCAGGTTGTGGATGAGACCAGTCACCTTCAGGCTTATCAAGAGAGTATTAACTGGTCCATTCAGGGAAAACTTTTCTCAAGGAGTGCCTCTTGTGCAACTGATTCTGATTTGAGAACCTGGCATGAGCCTTCTGATGAGACTTTGGCTCACAATCCTATACTTTCTTGGGGATCTTTTGCTACCTGTGGGAGAAGGGAGACGATGGAGGACACACATTTCATTCTGCCCAGTATGTGCAATGAAAAGGATATCCATGCTTTTGGTATCTTTGACGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCTGCTCAAGCTGTGCCAGCATTCCTGCAAACTTTAGGTTCTATGGGAAGTCCTGCTTCTGCACTAGTTGAAGCATTCCTTAGAACAGATGTTGCCTTCAGAAAAGAGCTTGATTCCTATCGTAAATCCAAGAAGGTCATCCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTCTTATAGTCAGATGCAAGCTTTTTGTTGCCAACATTGGTGATTGCAGGACAATCTTATGCCGGGCTGGTTATCCCATTGCTCTAAGTAACGATCATGTTGCAAGCTGTCCTGAAGAGAGAGAACGTGTGGTTCATCATGGAGGAAAAGTCCATTGGCTAGTTGATACCTGGAGGGTTGGTCCTCCTGCACTTCAGGTAACTCGTTCAATTGGGGATGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAAACTACCTTATCTGCAGAGGATGAATATCTGGTAATGGCCAGTGATGGACTTTGGGATGTCATGAGCAATACGGAAGTGGTAAACATAATCAAAGACACTGTCAAAGAGCCTGGAATGTGCTCTAAGAGATTGGCTACTGAAGCTGTGGCCCGCGGTAGCAAAGATAACATTACAGTCATTGTCGTTTTTTTACGCCCTGTATCTACAGCAGAGAGAATTTATTAG 1968 0.4294 MGIEIVEPNTCIRGCCSSTSIPLHLPPSSYTLLSPIARGAESVVYEGSLDGNKVAVKKPVLSTSEDINKFHKELQLLCKLDHPALATIIAAHAKPPNYLFFFKFYESPNLAQKLHLEEWTPSINHALMITIQLAKALQYLHNLGIVHRDVKPENILLDKNLYPHLTDFGLAEYKNDLKRVSLENWKSSGKPTGGFHKKNMVGTLIYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLHTEAQAHTVLEMNYTEQQLTAAVCNGLRPVLAAQELGVPSRLLSLIQRCWDANPENRLSFDDIVKDLESIMEHRKDVEDIHLRPCNLHVDQVVDETSHLQAYQESINWSIQGKLFSRSASCATDSDLRTWHEPSDETLAHNPILSWGSFATCGRRETMEDTHFILPSMCNEKDIHAFGIFDGHRGAAAAEFSAQAVPAFLQTLGSMGSPASALVEAFLRTDVAFRKELDSYRKSKKVIQKDWHPGCTAIAALIVRCKLFVANIGDCRTILCRAGYPIALSNDHVASCPEERERVVHHGGKVHWLVDTWRVGPPALQVTRSIGDDDLKPAVTAEPEITETTLSAEDEYLVMASDGLWDVMSNTEVVNIIKDTVKEPGMCSKRLATEAVARGSKDNITVIVVFLRPVSTAERIY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2197 655 Gene3D Transferase(Phosphotransferase) domain 1 20 342 - -
Glsi02g2197 655 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 317 - -
Glsi02g2197 655 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2197 655 SUPERFAMILY PP2C-like 380 647 IPR036457 -
Glsi02g2197 655 Pfam Protein kinase domain 30 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2197 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Glsi02g2197 655 Pfam Protein phosphatase 2C 392 638 IPR001932 -
Glsi02g2197 655 Gene3D - 377 650 IPR036457 -
Glsi02g2197 655 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2197 655 ProSiteProfiles PPM-type phosphatase domain profile. 388 645 IPR001932 -
Glsi02g2197 655 CDD PP2Cc 390 645 IPR001932 -
Glsi02g2197 655 SMART PP2C_4 378 643 IPR001932 -
Glsi02g2197 655 SUPERFAMILY Protein kinase-like (PK-like) 22 341 IPR011009 -
Glsi02g2197 655 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 379 649 - -
Glsi02g2197 655 FunFam Protein kinase and PP2C-like domain-containing protein 20 341 - -
Glsi02g2197 655 SMART PP2C_SIG_2 403 645 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2197 Glsi-ChrGlsi02 72566792 72574849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2197 99 655 PP2C-type Phosphatase Gene Family AT2G40860 66.667 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Glsi02g2197 Pkinase 2.8e-45 CL0016