Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2172 ATGGCTTCAGCAAGCAGAGCGGCAAATTCACTCTCCCAAGTTTACTCTTCGGGCACAAACAATAAGAGAACCCATAATACAGAGTCCATCAGCAAAGCAATTGCTCAGTACACTGAGGACGCTCGCCTCCATGCCGTCTTCGAGCAATCCGGCGGGTCTGGCAAGTCTTTTGATTACTCACAGTCCTTAAGAACCACCATTCAGTCTATTCCCGAGCAACAGATTACGGCTTACCTATTGAGAATTCAAAGAGGTGGGTATATTCAACCCTTTGGTTGCATGATTGCCGTCGATGAACCCACTTTTCGGATTCTTGGGTACAGTGAAAACGCGCGGGATTTGCTGGGTATTACCCCACAAGCAGTTCCGAGCCTTGAGAAGCCTGAAATTTTGACGATTGGAACTGATGTCCGCACGCTTTTTAACCCCTCAAGTGCAGTTCTACTCGAAAGGGCATTCGGAGCACGGGAAATTACGCTGTTGAACCCCATGTGGATTCATTCTAAGAATTCGGGGAAACCGTTTTATGCAATTTTACATAGAATTGATGTGGGAATTGTCATTGATTTGGAGCCTGCCAGAACAGAGGACCCTGCCCTGTCCATTGCTGGGGCGGTACAGTCGCAGAAGCTGGCGGTGCGCGCAATTTCGCAGTTGCAGTCGCTTCCTGGTGGAAATATTAAGCTTTTATGTGATACTGTAGTTGAGAGTGTTCGAGAACTTACAAACTATGACAGGGTAATGGTGTATAAATTTCACGAGGATGAGCATGGCGAGGTTGTCGCGGAGAGTAAGAGGCCAGATTTGGAGCCCTATATCGGTTTGCACTATCCTGCTACTGATATTCCCCAGGCTTCAAGGTTTTTGTTCAAGCAGAACCGGGTTAGGATGATTGTGGACTGCCATGCCACTCCTGTTAAGGTAATTCAGGATGAAGGGCTCATGCAGCCACTGTGCTTGGTTGGATCAACCCTTCGTGCCCCACATGGTTGTCATGCACAGTATATGACCAATATGGGATCAATTGCTTCATTAGTAATGGCAGTCATAATTAATGGGAACGATGAGGAAGCTGTTGCTGGTCGTAACTTGATGAGGCTTTGGGGCCTGGTTGTTTGTCATCATACTTCTGCTCGATGCATTCCTTTCCCCCTACGCTATGCTTGTGAGTTCCTTATGCAGGCCTTTGGGCTCCAACTGAATATGGAACTTCAATTGGCATCGCAGTTATTGGAAAAGCGAGTTTTAAGGACGCAGACTCTCTTGTGTGACATGCTGCTTCGGGACTCTCTTACTGGCATTGTTACTCAGAGCCCTAATATTATGGACCTGGTGAAATGTGATGGAGCAGCTCTCTACTCCCAAGGTAACTACTACCCATTAGGTGTCACCCCAACTGAGTCCCAGATAAAGGATATTATAGAGTGGTTGTTGGCCAGCCATGGAGATTCGACAGGTTTAAGTACTGATAGTCTGGCTGATGCTGGGTATCCTGGAGCTGCTTCTCTCGGTGACGCAGTATGTGGGATGGCTGTTGCTTATATCACTGAGAGGGTTTATCTATTCTGGTTCAGATCCCATACAGGAAAAGAGATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGACAAGGATGATGGACAGAGAATGCATCCACGTTCGTCATTCAAGGCATTTTTAGAAGTGGTAAAAAGCCGTAGTATGCCATGGGAGAATGCAGAAATGGATGCTATACACTCTTTGCAGCTTATTTTGCGAGACTCATTTAGAGATACTGAGCAAAACAATTCTAAGGCTCTTGTGCATTCCCAGCTTGGGAATCTAGAGTTGCAAGGGGTGGATGAGCTGAGTTCTGTGGCTAGAGAAATGGTTAGATTGATAGAAACTGCTACTGCTCCCATATTTGCTGTAAATGTTGATGGCTGCATAAATGGATGGAATGCAAAGGCCGCAGAATTGACAGGACTCTCAGTTGAGGAAGCCATGGGGAAGTCCTTGGTTCATGATCTTGTGTATAAAGAGTCTGAAGAAACTGTAGATAGACTTCTTTCTCGTGCTTTAAAAGGTGAGGAGGATAAGAATGTTGAAATCAAAATGAGGACGTTTGGCCCAGAACATCATAAGAAAGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGTAAGGATTATACTAATAATATAGTTGGAGTATGCTTTGTTGGTCAAGATGTTACTGGTCAAAAAGTGGTAATGGACAAATTCATTCACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCTTTAATCCCTCCCATTTTTGCATTAGATGATAACACGTGCTGTTCAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGACCGTGAGGAGATCATTGGAAAAATGCTGGTAGGAGAGGTTTTTGGTAGTTGCTGTCGACTGAAGGGTCCGGATTCTCTAACCAAGTTCATGATTGTCTTGCACAATGCACTTGGTGGACAGGATACAGATAAATTCCCCTTTTCATTTCTTGATCGGCATGGGAAATATGTGCAAGCACTCCTGACTGCTAATAAAAGGGTTGACATGGATGGTCAGATTATTGGGGCATTCTGCTTCTTGCAAATTGCAAGTCCTGAACTTCAACAGGCTCTGAAAATCCAGAGACAACAGGAGAAGAAATGTGTTGCTAGGATGAAAGAATTAGCTTACATTTGTCAAGAAATAAAAAATCCTTTGAATGGCATATGCTTCACAAACTCTCTTTTGGAAGCTACAGACTTGACTGATGATCAAAAGCAGTTTCTTGAGACTAGTACTGCTTGTGAGAAGCAGATGTTGAAGATAATACGGGATGTAAATCTGGAGAGCATTGATGATGGGTCCTTGGAGCTTGAAAAGGGTGAATTTTTACTTGGGAGTGTCATAAACGCAGTTGTTAGCCAAGTGATGTTATTGCTGAGAGAAAGAAATCTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACCTTTGCTGTTTATGGTGACCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCCATGCACCGTCTCCAGATGGTTGGGTAGAAATTCATGTTTTCCCAAGATTAAAACAAGTTTCTGATGGACTTACTCTTCTCCATGCTGAATTCAGGATGGTGTGTCCTGGTGAAGGTCTTCCACCTGAATTGATTCAAGACATGTTCCATAGCAGTCAGTGGGCAACTCAAGAAGGCTTAGGGCTGAGCATGTGCAGGAGGATTCTAAGGCTAATGAATGGCGAAGTCCAATACATCAGGGAGTCAGAACGATGCTACTTCTTAATAATTATTGAACTACCCATGACACGGAAAGACTCTAAAATTGCGAACTAG 3387 0.4417 MASASRAANSLSQVYSSGTNNKRTHNTESISKAIAQYTEDARLHAVFEQSGGSGKSFDYSQSLRTTIQSIPEQQITAYLLRIQRGGYIQPFGCMIAVDEPTFRILGYSENARDLLGITPQAVPSLEKPEILTIGTDVRTLFNPSSAVLLERAFGAREITLLNPMWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGNIKLLCDTVVESVRELTNYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVKVIQDEGLMQPLCLVGSTLRAPHGCHAQYMTNMGSIASLVMAVIINGNDEEAVAGRNLMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRDSLTGIVTQSPNIMDLVKCDGAALYSQGNYYPLGVTPTESQIKDIIEWLLASHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITERVYLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMPWENAEMDAIHSLQLILRDSFRDTEQNNSKALVHSQLGNLELQGVDELSSVAREMVRLIETATAPIFAVNVDGCINGWNAKAAELTGLSVEEAMGKSLVHDLVYKESEETVDRLLSRALKGEEDKNVEIKMRTFGPEHHKKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFALDDNTCCSEWNTAMEKLTGWDREEIIGKMLVGEVFGSCCRLKGPDSLTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQALLTANKRVDMDGQIIGAFCFLQIASPELQQALKIQRQQEKKCVARMKELAYICQEIKNPLNGICFTNSLLEATDLTDDQKQFLETSTACEKQMLKIIRDVNLESIDDGSLELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTFAVYGDQLRIQQVLADFLLNMVRHAPSPDGWVEIHVFPRLKQVSDGLTLLHAEFRMVCPGEGLPPELIQDMFHSSQWATQEGLGLSMCRRILRLMNGEVQYIRESERCYFLIIIELPMTRKDSKIAN 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2172 1128 PANTHER OS08G0260000 PROTEIN 73 955 - -
Glsi02g2172 1128 CDD HATPase_Phy-like 1005 1117 IPR044767 -
Glsi02g2172 1128 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 715 732 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 735 755 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355|GO:0009584
Glsi02g2172 1128 Gene3D PAS domain 82 329 - -
Glsi02g2172 1128 Pfam His Kinase A (phospho-acceptor) domain 898 958 IPR003661 GO:0000155|GO:0007165
Glsi02g2172 1128 SMART gaf_1 226 414 IPR003018 GO:0005515
Glsi02g2172 1128 FunFam Phytochrome 957 1123 - -
Glsi02g2172 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 767 870 IPR035965 -
Glsi02g2172 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 626 734 IPR035965 -
Glsi02g2172 1128 ProSiteProfiles PAS repeat profile. 753 805 IPR000014 -
Glsi02g2172 1128 Gene3D - 409 582 IPR043150 -
Glsi02g2172 1128 SMART HisKA_10 894 958 IPR003661 GO:0000155|GO:0007165
Glsi02g2172 1128 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 884 950 IPR036097 GO:0000155|GO:0007165
Glsi02g2172 1128 Pfam PAS fold 753 872 IPR013767 GO:0006355
Glsi02g2172 1128 Pfam PAS fold 622 737 IPR013767 GO:0006355
Glsi02g2172 1128 FunFam Phytochrome 409 539 - -
Glsi02g2172 1128 PIRSF Phytochrome_conventional 8 1126 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Glsi02g2172 1128 CDD PAS 764 872 IPR000014 -
Glsi02g2172 1128 Gene3D - 957 1125 IPR036890 -
Glsi02g2172 1128 NCBIfam PAS domain S-box protein 626 741 IPR000014 -
Glsi02g2172 1128 ProSiteProfiles Histidine kinase domain profile. 901 1121 IPR005467 -
Glsi02g2172 1128 Gene3D PAS domain 617 741 - -
Glsi02g2172 1128 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1110 IPR003594 -
Glsi02g2172 1128 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g2172 1128 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Glsi02g2172 1128 SUPERFAMILY GAF domain-like 412 590 - -
Glsi02g2172 1128 SUPERFAMILY GAF domain-like 206 401 - -
Glsi02g2172 1128 SMART pas_2 752 822 IPR000014 -
Glsi02g2172 1128 SMART pas_2 621 688 IPR000014 -
Glsi02g2172 1128 FunFam Phytochrome 615 747 - -
Glsi02g2172 1128 Pfam PAS fold 77 193 IPR013654 GO:0006355
Glsi02g2172 1128 Gene3D PAS domain 766 874 - -
Glsi02g2172 1128 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Glsi02g2172 1128 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 969 1118 IPR036890 -
Glsi02g2172 1128 CDD HisKA 894 950 IPR003661 GO:0000155|GO:0007165
Glsi02g2172 1128 Gene3D - 875 956 - -
Glsi02g2172 1128 FunFam Phytochrome 875 956 - -
Glsi02g2172 1128 CDD PAS 630 737 IPR000014 -
Glsi02g2172 1128 SMART HKATPase_4 1006 1121 IPR003594 -
Glsi02g2172 1128 Pfam Phytochrome region 417 591 IPR013515 GO:0006355|GO:0009584
Glsi02g2172 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Glsi02g2172 1128 Pfam GAF domain 227 404 IPR003018 GO:0005515
Glsi02g2172 1128 Gene3D - 207 565 IPR029016 -
Glsi02g2172 1128 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 394 IPR016132 -
Glsi02g2172 1128 FunFam Phytochrome 766 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2172 Glsi-ChrGlsi02 72211371 72217615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2172 5 1119 Histidine Kinase Gene Family AT4G16250 75.154 0.0 1776