Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2125 ATGAATATTGTAGAAGGAAGCAACTCCACCAACGTCCAAAGCGACGACGATTCGGACCTCCGACGAGGCCCTTGGACCGTCGATGAGGACCTCACCCTCATCAATTACATTGCCAATCACGGCGACGGGCGCTGGAACTCCCTCGCTCGCTCTGCCGGACTCAGACGAACTGGTAAGAGCTGCAGATTGAGGTGGCTCAACTATCTGCGACCCGATGTTCGACGTGGAAACATCACTCTCGAAGAACAACTTCTGATTCTTGAGCTTCATTCTCGCTGGGGAAACAGATGGTCCAAAATCGCCCAGTACTTGCCCGGAAGAACCGACAATGAGATCAAGAACTACTGGAGAACCCGAGTCCAAAAGCATGCCAAGCAACTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCGAGGCTAGCGGAGCGCATTCAAGCCGCCGCAGCCACTACTATCACGGGCTCTACGACTTTATCCACATCCCCCGCCACCGCCACCCTCACTCCCAACACGGCATATAACTACAACTACGACCACAACAACTTAGAGTTTCGGGGTTCCCAGGTTACACAAAGTTACACGCCGGAGAATAGCAACACGGCAGCTTCATCGGATTCGTTTGGGACGACTCAGGTTTCGCCAATCTCGGACTTGTCGGATTATTACAGTGCTGTCCCAGTCAGTACTAATACTCCTAACCCTAATCCGGATTCCTGCCAAACGGCTAATTTGGGCTGCTACTCGGATTGCATGTTCCCTCACCAAGGATTGGATATGCAAGCCATGGAACCAAACAACGGCAACCAATATTGGATCCAGAGTGGAGACACTTCGGACAATTTCTGGAATGTTGAAAATATGTTGTTTTTACAGCAACAGCTCAGTGACAGCATGTAA 921 0.5081 MNIVEGSNSTNVQSDDDSDLRRGPWTVDEDLTLINYIANHGDGRWNSLARSAGLRRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLAERIQAAAATTITGSTTLSTSPATATLTPNTAYNYNYDHNNLEFRGSQVTQSYTPENSNTAASSDSFGTTQVSPISDLSDYYSAVPVSTNTPNPNPDSCQTANLGCYSDCMFPHQGLDMQAMEPNNGNQYWIQSGDTSDNFWNVENMLFLQQQLSDSM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2125 306 Gene3D - 22 74 - -
Glsi02g2125 306 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi02g2125 306 CDD SANT 24 69 IPR001005 -
Glsi02g2125 306 FunFam MYB transcription factor 79 142 - -
Glsi02g2125 306 SMART sant 74 122 IPR001005 -
Glsi02g2125 306 SMART sant 21 71 IPR001005 -
Glsi02g2125 306 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Glsi02g2125 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Glsi02g2125 306 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Glsi02g2125 306 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Glsi02g2125 306 FunFam Myb transcription factor 22 74 - -
Glsi02g2125 306 CDD SANT 95 118 IPR001005 -
Glsi02g2125 306 Gene3D - 79 142 - -
Glsi02g2125 306 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Glsi02g2125 306 MobiDBLite consensus disorder prediction 200 219 - -
Glsi02g2125 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Glsi02g2125 306 MobiDBLite consensus disorder prediction 1 23 - -
Glsi02g2125 306 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2125 Glsi-ChrGlsi02 71629776 71631313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2125 5 298 MYB Transcription Factor Family AT3G06490 52.761 3.03e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g2125 Myb_DNA-binding 3.4e-15 CL0123