Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2104 ATGGCAACAGCAGAGGCAGCTCCGGCTGCTCTTGGCCCACGATATGCACCTGACGACCCTACTCTTCCAAAACCTTGGAAGGGACTGATTGATGGAAGCACTGGTCTATTATACTATTGGAATCCTGAAACCAACATCACCCAATATGAAAAACCTGCTGCGTTACCCCCACCCTTGCCTGCTGGCCCACCTCCTGTGGTTTCTACGCCCAAGCTGGCTCCCATACCAGTGGCTCATTCAATGCCATCTGGTGGGGTGGCAGGACAACAATTACTGCAAACCTCTCACCAACAGGGACAGCAGGTGAGCCACCTATCCCAGCAGCATGGGCAGACAATGCCACAACAGCAGAGTCCCCTGGTAGCACAGGTCACTCAGCAGCAGCCTTCTCAAGTGGCACAAACTGGTCAGCAACAGAGTTCACAGCCAGTGCAGTCCATGCCACAACCGAGTTTACAGCAAGTCAGACAGCAGATGTTGCAACCTCTGGGTCAGCAAATGCCCCAACAGCAAAGTCAGCAAATGCATCATCAGATGCCACCACAAGCCATACAGTCCCAACATTTTGGGCAAGGAGCATCACAGGATCATGGATCATATATGGTACAGCCACAAGCACATCAATTCACTCACCAGAACGTACATTATATGTCATATCCACAAAACATGCTTTCATCTGGGCAGCAAAATTCCCAACAGATTCAGCATAACACACACAGTCAGCCATTAGAAAATCAACAAGAGTTTAAATCAGCATTCCCAAAGATAGAGGAAGTAGATTTTAAAAATGGAAGTCAAGTTGGGCTTTCATCATCCCAGTATCAACAAAAGAGTGCCTTGTCTGTTCAAAACAATCAGAACATTCCTGCTGGAATCAATTCTGTTCAGGTGCCGCGTTTAGGTGTTAATGCTGGCCAGCCGCAACAGTTTGGTGGCATTTCAGGCACTATGCCACAATCTTCATCAGTAATGCACTCGCAGCAGGGTAGTTCTGATTTAGTTTACCAACATGGTTCTAGCTATCAGAACCAGATGGGCCCAGGAATGATGCATAGTCAGCCATCCAATGTCCATCCTGTTGACCAAAAGATGGGGCATGAGGATAACTTACGTGGTAGAGCTGGGAATGAATATTACTACAATTCTACCAAAGAGGTGCCAACAATGGGTTCTCAGCAGCCAAATATTGCTCCGTTACCCATTTCAAGAAATCAGCAGGATATGAGGGTAGGTAATTCCCCTTTTCAAAATGTAATGCCCAGTGGAAATGGATTAAGTGGTATCCCAGGGCATGCTATGCATAACATGTTTAATCCTCCAATAGGAGGACCTCCACCACCCGCGAGTAACTCTTTGATGAGGCCTCATGTTACTGATCTCTCGCCTGCTGAAATTTACTGTCAGCAACATGAAGTTACTGCAACGGGTGACAATGTTCCTCCCCCATTCATGACATTTGATACTGCTGGGTTCCCTCCAGAGATTTTGAGAGAGATCTATTCCGCTGGCTTCTCAACTCCAACGCCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACATTGGGTTATCTTATGCCTGCATTTATTCTTCTTAGACAGCGGCGTAACAATCCTCTGAATGGCCCTACAGTCTTGGTGTTGGCTCCAACCCGTGAACTTGCAACACAAATTCAAGATGAGGCCCTCAAATTTGGCCGATCTTCACGGGTGTCTTGCACGTGCTTGTATGGTGGAGCACCCAAAGCTCTTCAGCTAAAAGAGTTAGATCGTGGAGCAGACATTGTTGTTGCTACACCTGGTCGGCTCAATGACATACTTGAAATGAAGAAGATTGACTTTGGGCAAGTTTCACTTCTTGTGCTTGATGAGGCTGATCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCACCACGCAGACAAACTCTTATGTACACGGCAACCTGGCCGAAAGAAGTAAGAAAAATTGCTGGTGATCTTCTTGTTAACCCTGTCCAGGTTAACATTGGCAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTTCCACAAATGGAGAAACAGAGGCGATTAGAGCAGATCATCAGATCCCAAGAGCGAGGTTCTAAGGTCATAATTTTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGCATGGGCCGCAATTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAAATCAGTTTCGGACTGGGAAGTCACCAATTTTGGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATTAAGGATATAAGGGTCGTGATCAACTATGATTTCCCCACTGGGGTTGAGGATTATGTACACCGTATTGGACGAACAGGAAGGGCTGGTGCCACTGGAGTGTCATACACCTTTTTCTCTGAGCAGGACTGTAAACATGCCGGTGACTTGATCAAAGTTTTGGAGGGTGCTAACCAAGTTGTGCCTCCAGAGCTGCGGCAGATGACTTTGCGTGGGCCCGCTAACTTTGGTAAGGATCGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGCTGGGAGACTGGTGGTCGTGGTGGCTTGAGAGACAGTGGGTTTGGCGGTCGTGGTGGCATGAGAGACACTGGGTTTGGCGGTCAGGGTGGCTTGAGAGAGAGTGGGTTTGGCGGCCGTGGTGGCATGAGAGAGAGTGGGTTTGGTGGTCGTGGTGGCATGAGAGATGGTGCCAGTGGGCAAGGTGGGAGAAGTGATTTCTTTTCTGGTAGGGGCAACAGGGGTCGGGGATCAGGTGGCCCCCGTGGTGGTCATGTTGGTTGGGGTAGGGGTGAACGCGGCCTGCAGGATCGGTTCAACATGGATGGGCGAGGGGGACGAGGGCGTGGACGTGGACGTTTTGACAGTAGAAGGGATGCTGTTCACAGGAATAGAGGCAGAAGTTACAGTCGTAGCCCTGAAAGAGTTCGGACATGGGATTATAGCAGAAGTCGCAGCAGAAGCAGAAGTAGGAGCAGGAGCTGGTCTCGTGGCCGTAGTCGAAGCCGTAGCTGGTCTCGTGGTCGTAGTCGCAGTTACAGCCGTAGCATTAGTCGCAGCCCCAGCCGTGGCCGTGGCCGTAGGAGTCGAAGTTACAGTCGCAGCTGCAGTCGAAGCCCTAGCTATGATAGACGTGATAGGTCAGATAAACAGAATTATGATCAGAATGATCTTAGGGCATCAGAAGTAGAAGTTTCTGAACCAAGGAGGTCCCCTATGTCTCCCAGTACCCAGGGGAACTCCCATTTGGGAAATGAACATGTGGAGCAGCAACCAGTTGTTGGGAGTAGTGAGCCAGATAATCCAGAGGCTGTAGTCGACCCTTTTCATCAATCAATTCCCAATATTTAA 3483 0.4895 MATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPAALPPPLPAGPPPVVSTPKLAPIPVAHSMPSGGVAGQQLLQTSHQQGQQVSHLSQQHGQTMPQQQSPLVAQVTQQQPSQVAQTGQQQSSQPVQSMPQPSLQQVRQQMLQPLGQQMPQQQSQQMHHQMPPQAIQSQHFGQGASQDHGSYMVQPQAHQFTHQNVHYMSYPQNMLSSGQQNSQQIQHNTHSQPLENQQEFKSAFPKIEEVDFKNGSQVGLSSSQYQQKSALSVQNNQNIPAGINSVQVPRLGVNAGQPQQFGGISGTMPQSSSVMHSQQGSSDLVYQHGSSYQNQMGPGMMHSQPSNVHPVDQKMGHEDNLRGRAGNEYYYNSTKEVPTMGSQQPNIAPLPISRNQQDMRVGNSPFQNVMPSGNGLSGIPGHAMHNMFNPPIGGPPPPASNSLMRPHVTDLSPAEIYCQQHEVTATGDNVPPPFMTFDTAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEALKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQERGSKVIIFCSTKRLCDQLARSMGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDCKHAGDLIKVLEGANQVVPPELRQMTLRGPANFGKDRGGMSRFDSGGGRWETGGRGGLRDSGFGGRGGMRDTGFGGQGGLRESGFGGRGGMRESGFGGRGGMRDGASGQGGRSDFFSGRGNRGRGSGGPRGGHVGWGRGERGLQDRFNMDGRGGRGRGRGRFDSRRDAVHRNRGRSYSRSPERVRTWDYSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISRSPSRGRGRRSRSYSRSCSRSPSYDRRDRSDKQNYDQNDLRASEVEVSEPRRSPMSPSTQGNSHLGNEHVEQQPVVGSSEPDNPEAVVDPFHQSIPNI 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2104 1160 Gene3D - 460 693 IPR027417 -
Glsi02g2104 1160 FunFam probable ATP-dependent RNA helicase DDX17 452 692 - -
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 224 243 - -
Glsi02g2104 1160 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 484 512 IPR014014 GO:0003724
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 1083 1110 - -
Glsi02g2104 1160 Pfam DEAD/DEAH box helicase 508 678 IPR011545 GO:0003676|GO:0005524
Glsi02g2104 1160 SMART helicmild6 743 823 IPR001650 -
Glsi02g2104 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 689 IPR014001 -
Glsi02g2104 1160 FunFam ATP-dependent RNA helicase RhlB 693 865 - -
Glsi02g2104 1160 CDD WW 23 51 IPR001202 GO:0005515
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 975 1031 - -
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 93 156 - -
Glsi02g2104 1160 Gene3D - 694 864 IPR027417 -
Glsi02g2104 1160 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 635 643 IPR000629 -
Glsi02g2104 1160 Gene3D - 16 54 - -
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g2104 1160 SMART ultradead3 503 706 IPR014001 -
Glsi02g2104 1160 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Glsi02g2104 1160 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Glsi02g2104 1160 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 446 862 - -
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 864 1160 - -
Glsi02g2104 1160 SMART ww_5 21 54 IPR001202 GO:0005515
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 1114 1141 - -
Glsi02g2104 1160 CDD SF2_C_DEAD 703 832 - -
Glsi02g2104 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 862 IPR001650 -
Glsi02g2104 1160 Pfam Helicase conserved C-terminal domain 715 823 IPR001650 -
Glsi02g2104 1160 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
Glsi02g2104 1160 MobiDBLite consensus disorder prediction 1032 1052 - -
Glsi02g2104 1160 Pfam WW domain 22 52 IPR001202 GO:0005515
Glsi02g2104 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 837 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2104 Glsi-ChrGlsi02 71181213 71188646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2104 472 843 Eukaryotic Initiation Factors Gene Family AT3G19760 34.316 5.23e-66 227