Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2090 ATGTGCTTACTCTTATTGATACTACTTGACATAATCTTTAAATTTGATATTGATTCTCCCGTTCAGATTAAAGGATCATGGGCTTCTTTGGCTGTTGCAAAGGAAGTAATGTTTATACGGAGGCTAACAATAAATCCTTCATACCAAACAATTCTGCAGTATGCCTCAGAAATCAGTGAGAGCAAGCTTCGTGGTTTTTGTACACACAAATTCTTATATGACAATTCAAACTTGAAAGTTTGGTCATTGACACATAATGTTTCTTATATTTTCCTTTGGTATAATCAAATGCTCCGTTCCAAATTGAAAAGTTGTCATGTATTTGCATTTCTGCTGGCTCTTCATAATTTTATTGTATTTTTATTTCTCTTTTTTGGGGCTTTAATTCCATTATTATGTGCAGGGAACACTGGCTATCCTGGTAGAGAAGCTGCAATAACAACCACTCCACGTACTATACAATTTCAACCCATTTCAGTCCCTTCCATTTCGATGGATGAATTGAAGTCTGTGACCGATAATTTTGGCACAAAATCTTTCGTTGGCGAGGGTGCTTATGGCAAAGTATATCATGCTGTACTGAAAAATGGGCTAGCTGTGGCTATTAAAAAGTTAGATTCCAGTAAGCAACCAGAACAAGAATTTCTTGCTCAGGTCTCCATTGTGTCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTGGTTATTGTGTCGATGGTCCTCTTCGTGCCCTAGCCTACGAGTTTGCTCCAAAAGGATCACTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCACAACCTGGTCCGGTTCTGTCATGGGCACAAAGAGTTAAAATTGCAGTTGGAGCGGCTAGAGGACTTGAATATCTACATGAAAAAGCAGAAACCCATATTATCCATCGCTATATCAAGTCTTGCAACATACTACTTTTTGATGATGGTGTTGCCAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGAAGCAGCACGTGTCCATTCTACTCGTGTTCTTGGAACCTTCGGTTATCATGCTCCGGAATTTGCAATGACTGGAGATCTCAGTTCCAAAAGTGATGTCTACAGTTTCGGAGTTATACTGCTGGAACTCCTAACCGGGCGTAAACCAGTCGATCATACACTGCCGCGAGGGCAGCAAAGCCTTGTGACTTGGGCAACACCAAAACTCAGTGAAGATAAGGTAAAGCTGTGTGTGGATACCAGATTACAGGATGACTACCCTCCAAGGGCAGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTTTACAATATGAAGTTGGGCTAAGGCCAAATATGAGCATCGTAGTCAAAGCTTTACAACCTCTATTGAATACTCGTTCTGTTCAGCCAAAGGAAAACCACTGA 1401 0.4061 MCLLLLILLDIIFKFDIDSPVQIKGSWASLAVAKEVMFIRRLTINPSYQTILQYASEISESKLRGFCTHKFLYDNSNLKVWSLTHNVSYIFLWYNQMLRSKLKSCHVFAFLLALHNFIVFLFLFFGALIPLLCAGNTGYPGREAAITTTPRTIQFQPISVPSISMDELKSVTDNFGTKSFVGEGAYGKVYHAVLKNGLAVAIKKLDSSKQPEQEFLAQVSIVSRLKHENVVELVGYCVDGPLRALAYEFAPKGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAETHIIHRYIKSCNILLFDDGVAKIADFDLSNQAPDEAARVHSTRVLGTFGYHAPEFAMTGDLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKLCVDTRLQDDYPPRAVAKMAAVAALCLQYEVGLRPNMSIVVKALQPLLNTRSVQPKENH 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2090 466 FunFam pto-interacting protein 1 251 462 - -
Glsi02g2090 466 Pfam Protein tyrosine and serine/threonine kinase 180 451 IPR001245 GO:0004672|GO:0006468
Glsi02g2090 466 ProSiteProfiles Protein kinase domain profile. 175 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2090 466 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
Glsi02g2090 466 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 145 457 - -
Glsi02g2090 466 Gene3D Phosphorylase Kinase; domain 1 142 249 - -
Glsi02g2090 466 Gene3D Transferase(Phosphotransferase) domain 1 251 466 - -
Glsi02g2090 466 SUPERFAMILY Protein kinase-like (PK-like) 152 451 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2090 Glsi-ChrGlsi02 71028915 71032047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2090 156 457 Receptor kinase-like Gene Family AT4G02010 47.785 4.00e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Glsi02g2090 PK_Tyr_Ser-Thr 2.1e-45 CL0016