Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2087 ATGGGTGGGGGAGGGAACAAATTTGAAGAAACAGCAAAGAAAGTTTCCATTTTTATGCTTCTCTTTTACTCCCCCTTGTGTTTTCTCCAATTCCCTCTATACTTTGACCTTCTGCTGCGAATTGAAGAGAGGGAGGAAGGATGCTCTGAGAAGGTGCATTTCACCATTTCAGATTGGATTCAAGGCCCCATCTGTGCATTTGAGAAAACCCTGCTAGGAAACATACATTGGAAGGAAGAATATGACAATGGCTTCGAATCTGAGAGGAATGTTGGGGCTTATGAGATCTAGTCTATGCAGTTTAGTTTTCTTCCTTTATGCACTTTTGTTAGGGGAAAAATAATTGGCCTCAGCAAAATGGCTTCTGGTCTGAATTCAGGGTTATCCAAGAAAACTTTTGTCTTTGGTTTAAAAGTGTGGGTATTAATGGGCATAACCGTTGGGTTTTTTATTATAATCATTCTTGTGGTGCTATCGATATGTCTTACCCTGCGAAAGAAATCCAGAAAAGTCAACAGCATGCTTCCTTTTAGCCATATGTTATCCGTTTCAGAGGAGATCAAAGAGATTAGAGTTGATCAAGTTTCAGCAAATAACCATCCTCAGAATGCTGCTTTTATAAGTCTGAATGACAAATTTAGTGACAGGGAGTCTGCCAAGGTTTTGATCCAAACGACGAATGGGGATAATAGCAGTCAATCAGGCTCATTTAATCATGTAGAGAAAGATGGCGCTGGCTCTCAATCAGGCGAAGACAGTGGCGCTAAGACTATTTCTGCTTCCAGGTCTTCTTTGCATCCTATAACTGCACCATCCCCCTTGTCTGGTCTGCCTGAATTCTCTCAACTTGGCTGGGGGCACTGGTTTACGTTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAAAGACAATGTTATTGGGGAAGGTGGATATGGCGTTGTTTATCGAGGTCAGCTAATTAATAAGAATCCTGTGGCTGTTAAGAAGATCCTCAATAACTTAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAAGCTATTGGTCATGTGCGGCATAAGAACCTGGTTCGCCTTCTTGGCTATTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTTAACAACGGCAACTTGGAGCAATGGCTTCACGGTGCCATGCAGCAGCATGGGTATTTAACTTGGGATGCTCGAATGAAAATTCTCCTCGGGACAGCTAAAGCGCTGGCATACTTGCATGAGGCAATTGAGCCAAAAGTTGTACATCGAGACATTAAGTCGAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCTAAGCTGCTCGGTGCTGGAAAAAGTCATATTACAACTAGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGCTTACTAAATGAGAAGAGTGATGTTTATAGCTTTGGAGTATTGCTCCTTGAAGCAATTACTGGAAGAGATCCTGTGGATTATGGTCGACCGGCAGATGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGAATAGGCGTTCTGAAGAGGTGGTGGACCCAAAAATTGAGACTAGGCCATCGACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGGAAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAAGAATATCCCGTACCTCGAGAGGATCGAAGACGGAGAAGGAGTCAGGCAGGAAACATGGAGGTGGAGGCCCAGAGGGAGACATCTGATACAGAAAAGAGTGACATTCCAGATTATAGGTCAAATGAAAGAAACAGAAGGAGCCAGAGGATTTAA 1878 0.4286 MGGGGNKFEETAKKVSIFMLLFYSPLCFLQFPLYFDLLLRIEEREEGCSEKVHFTISDWIQGPICAFEKTLLGNIHWKEEYDNGFESERNVGAYEIXSMQFSFLPLCTFVRGKIIGLSKMASGLNSGLSKKTFVFGLKVWVLMGITVGFFIIIILVVLSICLTLRKKSRKVNSMLPFSHMLSVSEEIKEIRVDQVSANNHPQNAAFISLNDKFSDRESAKVLIQTTNGDNSSQSGSFNHVEKDGAGSQSGEDSGAKTISASRSSLHPITAPSPLSGLPEFSQLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYRGQLINKNPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMQQHGYLTWDARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYGRPADEVNLVDWLKMMVGNRRSEEVVDPKIETRPSTSALKRALLTALRCVDPDSGKRPKMSQVVRMLESEEYPVPREDRRRRRSQAGNMEVEAQRETSDTEKSDIPDYRSNERNRRSQRI 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2087 625 Pfam Protein kinase domain 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2087 625 MobiDBLite consensus disorder prediction 250 270 - -
Glsi02g2087 625 PANTHER OS01G0323000 PROTEIN 123 603 - -
Glsi02g2087 625 FunFam Putative receptor-like protein kinase 283 376 - -
Glsi02g2087 625 FunFam Putative receptor-like serine/threonine-protein kinase 377 588 - -
Glsi02g2087 625 ProSitePatterns Protein kinases ATP-binding region signature. 307 330 IPR017441 GO:0005524
Glsi02g2087 625 Gene3D Transferase(Phosphotransferase) domain 1 377 589 - -
Glsi02g2087 625 MobiDBLite consensus disorder prediction 575 625 - -
Glsi02g2087 625 SUPERFAMILY Protein kinase-like (PK-like) 285 581 IPR011009 -
Glsi02g2087 625 MobiDBLite consensus disorder prediction 224 243 - -
Glsi02g2087 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Glsi02g2087 625 Gene3D Phosphorylase Kinase; domain 1 281 376 - -
Glsi02g2087 625 MobiDBLite consensus disorder prediction 224 271 - -
Glsi02g2087 625 MobiDBLite consensus disorder prediction 572 625 - -
Glsi02g2087 625 SMART serkin_6 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2087 625 CDD STKc_IRAK 307 573 - -
Glsi02g2087 625 ProSiteProfiles Protein kinase domain profile. 301 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2087 Glsi-ChrGlsi02 70970707 70975436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2087 105 575 Trihelix Transcription Factor Family AT1G70460 37.815 1.78e-90 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi02g2087 Pkinase 1.1e-48 CL0016