Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2078 ATGGCGAATGGCAAGATTATTGTTGGAGGAGTCTCCATCATCCTTGTAGTAGGCGTAGCTATTGCTGTTATAGCTGGTGTGGCTCAACATGGTGGCAAGAGTGATGATCAAATCTCCACAAGTTCTAAGTCTGTGGCTGCTATGTGCAGCCCAACCGATTACAAGCAACAATGTGTTGAAAGCCTTGACTCTCTGGCTCATAACCAAAGTGCCACCCCAAAGGACTTCATCCAAGCTGCCATTAACTACACCCTCGCAAAGGTTCAATCTGCACTGACCATGTCTGGTGATCTAGCCAAGAAAGCAGAGGGGTCTAGGCAAAAGATGGCAATGGACGATTGCCAGGACTTGTTGCAGTCCGCCATTGCCGAGCTCCAAGCTTCTATTTCAATGGTGGGTGATAGCCAGCTGCATTCTCTGGCTGAAAGAGAAGCAGAGCTTCAAGATTGGCTAAGTGCTGTGATATCTTACCAAGCATCCTGCCTTGATGGGATGGAGCAACCTGACCTGAAAGTGGACATGACCAATGGGCTTCTCAATGCCACCCAGCTAACCAGCAATGCCTTGGCCATTATTTCTGGCATTTCCAACATCTTGAGCTCCTTCAATATCCCTACAAACTCGAGTTCGAGCTCGAGAAGGCTGCTCGAAACACACAGTGTAGAATACCCTTCTTGGTTACCAAATGCTGACAGGAAGTTATTGCAAGCCCAAAAAAGTGTTAAGCCTAATGTAATAGTGGCACAAGATGGGAGTGGACAATTCAAAACTATTGGTGAGGCTCTTGCTGCCTATCCTAAGAATAACAAAGGAAGATTTGTTATATATGTGAAGGCAGGGGTTTACAACGAGTATGTCATAGTCACAAAGAAGCAAGTTGATGTGTTTATGTATGGAGATGGACCTCAGAAGACCATAGTCACCGGAAGTAAAAGCTATGCAGCCGGTGTCTCCACCTATCAGACTGCACCCTTTTGGTTTCATGTTAATGCCTCCAGAATTGTGTTCACTAAGATAAATTATAAAGCAGTTCCGAATGGAATAGGTAACAAACACACTGCCACTAAATCACCACACCCCCAAGTCAAACTGGTTCTTCTTGTTGCACCAGCGGCTATTGGCTTTGGGTTCATAGCAAAGGATATGGGATTCAGAAACACAGCAGGCCCTGAGGGCCACCAGGCAGTGGCACTTAGAGTTCAATCAGACAGGGCAGCCTTCTACAACTGCAGAATGGAAGGGTACCAAGACACTCTGTACACTCAAGCCCATCGCCAGTTCTACACCAACTGCGTCATTTCAGGCACTATAGATTTCATCTTCGGAGATGCCGCAGCAGTAATCCAGAACTCAATTTTGATAGTGAGAAAGCCCATGAGCAACCAGCAGAACATAGTCACAGCTCATGGGAGAACAGACAAACGAGAAACCACAGGCCTAGTTATCCAAAACTGCAAAATAGTCCCCGATGAGCAGCTCTTCCCCACAAGGTTTCAGACCAGGTCCTATCTGGGTCGGCCATGGAAGGCCTACTCAAGGACTGTTATAATGGAATCCACCATTGGGGACTTTATACAACCAGATGGGTGGCTTCCATGGACTGGGGACCTGTACCTCGACACTCTGTTTTATGCAGAGTATGCTAATAGGGGACCTGGGGCTGTCACTACCAAAAGGGTCAAATGGAAGGGATACAAAGTGATAACTAATAGAATTGAAGCTCATCAATTCACTGCACAGCCATTTATACAAGGGAATGAATGGCTTCCCAGTACAGGTGCACCCTTCTTCCTTGGCTTCACAAACAGTAAGGATCATTTGTCAAGATGA 1830 0.4645 MANGKIIVGGVSIILVVGVAIAVIAGVAQHGGKSDDQISTSSKSVAAMCSPTDYKQQCVESLDSLAHNQSATPKDFIQAAINYTLAKVQSALTMSGDLAKKAEGSRQKMAMDDCQDLLQSAIAELQASISMVGDSQLHSLAEREAELQDWLSAVISYQASCLDGMEQPDLKVDMTNGLLNATQLTSNALAIISGISNILSSFNIPTNSSSSSRRLLETHSVEYPSWLPNADRKLLQAQKSVKPNVIVAQDGSGQFKTIGEALAAYPKNNKGRFVIYVKAGVYNEYVIVTKKQVDVFMYGDGPQKTIVTGSKSYAAGVSTYQTAPFWFHVNASRIVFTKINYKAVPNGIGNKHTATKSPHPQVKLVLLVAPAAIGFGFIAKDMGFRNTAGPEGHQAVALRVQSDRAAFYNCRMEGYQDTLYTQAHRQFYTNCVISGTIDFIFGDAAAVIQNSILIVRKPMSNQQNIVTAHGRTDKRETTGLVIQNCKIVPDEQLFPTRFQTRSYLGRPWKAYSRTVIMESTIGDFIQPDGWLPWTGDLYLDTLFYAEYANRGPGAVTTKRVKWKGYKVITNRIEAHQFTAQPFIQGNEWLPSTGAPFFLGFTNSKDHLSR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2078 609 Pfam Plant invertase/pectin methylesterase inhibitor 44 191 IPR006501 GO:0004857
Glsi02g2078 609 FunFam Pectinesterase 41 196 - -
Glsi02g2078 609 CDD PMEI-like_3 47 197 - -
Glsi02g2078 609 SUPERFAMILY Pectin lyase-like 373 599 IPR011050 -
Glsi02g2078 609 PANTHER PECTINESTERASE 17 590 - -
Glsi02g2078 609 SUPERFAMILY Pectin lyase-like 241 344 IPR011050 -
Glsi02g2078 609 SMART PMEI_2 40 191 IPR006501 GO:0004857
Glsi02g2078 609 Pfam Pectinesterase 244 340 IPR000070 GO:0030599|GO:0042545
Glsi02g2078 609 Pfam Pectinesterase 371 586 IPR000070 GO:0030599|GO:0042545
Glsi02g2078 609 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Glsi02g2078 609 NCBIfam pectinesterase inhibitor domain 39 194 IPR006501 GO:0004857
Glsi02g2078 609 Gene3D - 238 600 IPR012334 -
Glsi02g2078 609 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 196 IPR035513 -
Glsi02g2078 609 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Glsi02g2078 609 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2078 Glsi-ChrGlsi02 70889281 70892172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2078 5 600 Carbohydrate Esterase AT3G05610 41.818 3.77e-165 485