Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g2071 | ATGACAAGGGAGACCAGTTTAGATGGAGATATCACTACATCTGAGACAACAAATATTCAAGGAGAGACTAACGAGCAGAAAAGTTCAAAGAAGAGCAAGGAAAAAGATGAAACCACCAACACAGTACCTTTTTACAAGCTTTTCTCGTTTGCAGATTCTTTGGATCATTTATTGATGTTTGTGGGGACAGTCGGTGCTGTTGGCAATGGAATCTCTATGCCCTTAATGACTATAGTTTTTGGAAATTCGGTTGATGCATTTGGAGGAGCCACAAACACTAAAGAAGTCGTTGATGAAGTTTCCAAGGATATCAGCTTCTTTGATAAGGAAACTAACACTGGCGAGGTTGTCGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTAGGACAATTCATCCAGTTAGTGGGAACTTTCATAGGAGGTTTTGTCATAGCATTCATTGAGGGATGGCTTCTAACTGCCGTCATGCTATCTTCGGTTCCACCTGTTGTATTTGCTGGTGCTATGATAAGCATTATTGTGGCAAAGGTGACAACCCGTGGACAAGCGGCTTATTCTACAGCAGCAACTGTAGTTGAACAGACTATTGGTTCTATCCGAACTGTTGCATCATTCACAGGGGAAAAGCAAGCTATAGCTAAATATAATCAGTCCTTAATCAAAGCTTATAGGACTAGTTTGCAAGAGGGAGTAGCTTCTGGTTTGGGTTTCGGTTTAGTTTTCCTTGTTATCTTCTGCACTTATGGTTTGGCCATATGGTATGGTGGGAAAATGGTATTAGAGAAAGGTTATACAGGAGGGAAGATTGTGAATGTAATTTTTGCAGTATTGACGGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTAAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTCTAAGATGTTTAAAACAATAAAAAGGAAGCCAGACATTGATGCTTATGACACTAATGGTAAGCAGCTAGATGATATACGTGGAGATATAGAACTGAGGGAAGTTTTCTTTAGCTATCCTACAAGACCAGATGAACAGATATTCAATGGGTTTTCTCTTTCAATACCAAGTGGCACTACTACAGCTTTGGTAGGGCAGAGTGGGAGCGGGAAATCAACAGTTATTAGTCTGATAGAGAGATTTTATGATCCGCAAGCTGGTGAAGTTCTCATTGATGGTATCAATATCAAAGAGTTTCAACTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCTGTTCTCTTTACTTGTAGCATTAAAGAGAACATTGCCTATGGTAAGGAAGGTGCAACAGATGAAGAAATCAGAGTTGCAGCAGAGCTTGCTAATGCTGCTAAATTCGTAGATAAACTTCCTCAGGGGTTAGACACTATGGTTGGTGAACATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTTGCTATAGCAAGAGCAATATTGAAAGACCCAAGAATTCTTCTTCTTGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAAAGAATAGTGCAGGAGGCACTGGACAGAATAATGATAAACAGAACTACTGTCATTGTAGCCCATCGCTTAAGTACTATAAGAAATGCTGATATTATTGCCGTTATTCATGAAGGAAAAATAGTAGAAAAAGGTTCACATGCGGAGCTCACTAAGGATTCTGATGGAGCCTATAGCCAGCTCATTGGACTGCAAGAAATAAAGAAGGAATCAAAAAATAATGGCGAAAATGACCCTGATAAGCCAGAAAGTATTGTGAATTCAGGAAGGCAATCAAGTCAAAGACTTTCTTTCTTAAAATCTATAAGCCGAGAGTCATCTGAAATTGGAAACAGCAGTCGTCACTCATTCTCAGTGTCATATGGTGTGCCTCCAACAGTTGGTCTCTTGGAAACAGCAGGAACAGGACCTGAAGATCCCCCAACAGCAACTTCGCCACAACCTCCAGAAGTGCCACTTTACCGTCTGGCTTATCTAAACAAGCCTGAGATCCCCGTCTTACTCATAGGGACCCTAGCTGCAGTGGCAAATGGTGCAGTATTACCTGTTCTTGGGTTGATGCTCTCCAAAATGATAAGTACTTTCTACGAGCCAGCAGATGAAGTTCGGAAAGATTCAAAATTTTGGGCATTGATATTTGTTGCCCTTGGTGTGGTATCCTTCTTAATTTTTCCATCAAGGTCCTACTTTTTTGCTGTTGCTGGTGGTAAGTTGATAAAAAGGATCAGGTTAATGTGTTTTGAGAAAGCAATTCATATGGAAGTAAGTTGGTTTGACGAAACTGAGCATTCAAGCGGAGCCCTTGGAGCAAGACTATCTACTGATGCAGCTTCTATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACTGCACTTGTCGGCTTGGTAATTGCTTTTGAGGCAAGCTGGCAGCTTGCTCTTATAATTCTTGTTATGCTACCCTTATTAGGACTAAATGGATATGCTCAATTCAAATTCATACAAGGATTCAGCGCAGATGCTAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCAGTAGGGAGTATTAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTGTACCATAAAAAATGTGAAGGACCAACTAAGACAGGAATAAGGCAAGGGCTAATAAGCGGAATTGGGTTTGGGTTATCCTTCTTCTTGCTGTTTTCTGTCTACGCATGCAGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGTAAAACATCATTCTCAGATGTTTACCAAGTCTTCTTTGCTCTCACTATGGCAGCAATAGGAGTATCGCGATCTGGTTCCTTGGCTCCTGATTCAAGTAAAGCAAAAAGTGCTGCTGCTTCTATATTTGCTATACTTGATAGGAAATCAAAAATAGACCCTAGTGATGACTCTGGAATGAAATTGGAAGACTTGAAGGGAGAAATTGAGTTTCATCATGTCAGTTTCAATTATCCAACCAGACCTGATGTTCAAGTATTCAGAGATCTTTCCTTGACCATTCATTCAGGCAAGACAGTTGCTCTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTGTGATCTCATTGTTAGAGAGATTTTATGACCCTGATTCAGGTCACATTACACTGGATGGAATAGAAATCCAAAAGCTACAGGTTAAATGGTTAAGGCAGCAAATGGGGCTTGTAAGTCAGGAGCCTGTGTTATTTAATGACACAATCCGAGCCAATATTGCATATGGAAAGGGAGGAGATGCAACTGAAGCAGAAATTATTGCTGCAGCAGAACGGGCAAATGCCCACAAGTTCATTAGTAGTTTGCAGCAGGGGTATGACACAATAGTTGGGGAGAGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCTATCGCACGAGCCATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCCCTTGATGCAGAGTCTGAAAAAGTGGTTCAGGATGCACTGGATCAAGTTATGGTGGATCGGACCACAATTGTGGTGGCACATAGGTTGTCCACTATTAAGGGTGCAGATCTAATTGCAGTGGTAAAAAATGGAGTCATAGAAGAGAAAGGGAAGCATGAAACTTTACTCAACAAGGGTGGTGCCTATGCTTCCTTAGTAGCACTACACACAAGTGCTTCTTCATCTTAG | 3732 | 0.4169 | MTRETSLDGDITTSETTNIQGETNEQKSSKKSKEKDETTNTVPFYKLFSFADSLDHLLMFVGTVGAVGNGISMPLMTIVFGNSVDAFGGATNTKEVVDEVSKDISFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLVGTFIGGFVIAFIEGWLLTAVMLSSVPPVVFAGAMISIIVAKVTTRGQAAYSTAATVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYRTSLQEGVASGLGFGLVFLVIFCTYGLAIWYGGKMVLEKGYTGGKIVNVIFAVLTGSMSLGQASPSLSAFAAGQAAASKMFKTIKRKPDIDAYDTNGKQLDDIRGDIELREVFFSYPTRPDEQIFNGFSLSIPSGTTTALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINIKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKEGATDEEIRVAAELANAAKFVDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADIIAVIHEGKIVEKGSHAELTKDSDGAYSQLIGLQEIKKESKNNGENDPDKPESIVNSGRQSSQRLSFLKSISRESSEIGNSSRHSFSVSYGVPPTVGLLETAGTGPEDPPTATSPQPPEVPLYRLAYLNKPEIPVLLIGTLAAVANGAVLPVLGLMLSKMISTFYEPADEVRKDSKFWALIFVALGVVSFLIFPSRSYFFAVAGGKLIKRIRLMCFEKAIHMEVSWFDETEHSSGALGARLSTDAASIRALVGDALGLLVQNIATALVGLVIAFEASWQLALIILVMLPLLGLNGYAQFKFIQGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYHKKCEGPTKTGIRQGLISGIGFGLSFFLLFSVYACSFYAGARLVEDGKTSFSDVYQVFFALTMAAIGVSRSGSLAPDSSKAKSAAASIFAILDRKSKIDPSDDSGMKLEDLKGEIEFHHVSFNYPTRPDVQVFRDLSLTIHSGKTVALVGESGSGKSTVISLLERFYDPDSGHITLDGIEIQKLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAERANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDQVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIEEKGKHETLLNKGGAYASLVALHTSASSS | 1243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2071 | 1243 | CDD | ABC_MTABC3_MDL1_MDL2 | 337 | 575 | - | - | |
| Glsi02g2071 | 1243 | MobiDBLite | consensus disorder prediction | 579 | 602 | - | - | |
| Glsi02g2071 | 1243 | Gene3D | ABC transporter type 1, transmembrane domain | 100 | 592 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | CDD | ABC_MTABC3_MDL1_MDL2 | 999 | 1234 | - | - | |
| Glsi02g2071 | 1243 | Gene3D | ABC transporter type 1, transmembrane domain | 659 | 965 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | Gene3D | ABC transporter type 1, transmembrane domain | 38 | 99 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | ProSitePatterns | ABC transporters family signature. | 1139 | 1153 | IPR017871 | GO:0005524|GO:0016887 | |
| Glsi02g2071 | 1243 | Pfam | ABC transporter transmembrane region | 677 | 949 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi02g2071 | 1243 | Pfam | ABC transporter transmembrane region | 102 | 288 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi02g2071 | 1243 | SUPERFAMILY | ABC transporter transmembrane region | 665 | 984 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | FunFam | ABC transporter B family member 1 | 657 | 965 | - | - | |
| Glsi02g2071 | 1243 | SUPERFAMILY | ABC transporter transmembrane region | 46 | 319 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 999 | 1236 | IPR003439 | GO:0005524 | |
| Glsi02g2071 | 1243 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 328 | 575 | IPR027417 | - | |
| Glsi02g2071 | 1243 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 103 | 302 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi02g2071 | 1243 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 667 | 982 | - | - | |
| Glsi02g2071 | 1243 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 59 | 298 | - | - | |
| Glsi02g2071 | 1243 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 988 | 1236 | IPR027417 | - | |
| Glsi02g2071 | 1243 | FunFam | ABC transporter B family member 1 | 327 | 576 | - | - | |
| Glsi02g2071 | 1243 | Pfam | ABC transporter | 1018 | 1167 | IPR003439 | GO:0005524 | |
| Glsi02g2071 | 1243 | Gene3D | - | 989 | 1238 | IPR027417 | - | |
| Glsi02g2071 | 1243 | Gene3D | - | 327 | 576 | IPR027417 | - | |
| Glsi02g2071 | 1243 | PANTHER | ABC TRANSPORTER B FAMILY | 101 | 578 | IPR039421 | - | |
| Glsi02g2071 | 1243 | Pfam | ABC transporter | 356 | 504 | IPR003439 | GO:0005524 | |
| Glsi02g2071 | 1243 | MobiDBLite | consensus disorder prediction | 639 | 658 | - | - | |
| Glsi02g2071 | 1243 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 678 | 964 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Glsi02g2071 | 1243 | SMART | AAA_5 | 364 | 557 | IPR003593 | GO:0016887 | |
| Glsi02g2071 | 1243 | SMART | AAA_5 | 1026 | 1220 | IPR003593 | GO:0016887 | |
| Glsi02g2071 | 1243 | ProSitePatterns | ABC transporters family signature. | 476 | 490 | IPR017871 | GO:0005524|GO:0016887 | |
| Glsi02g2071 | 1243 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Glsi02g2071 | 1243 | FunFam | ABC transporter B family member 1 | 989 | 1238 | - | - | |
| Glsi02g2071 | 1243 | FunFam | ABC transporter B family member 9 | 966 | 988 | - | - | |
| Glsi02g2071 | 1243 | Gene3D | ABC transporter type 1, transmembrane domain | 966 | 1240 | IPR036640 | GO:0005524|GO:0016020 | |
| Glsi02g2071 | 1243 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 337 | 573 | IPR003439 | GO:0005524 | |
| Glsi02g2071 | 1243 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g2071 | Glsi-ChrGlsi02 | 70776122 | 70782560 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2071 | 640 | 1240 | Calmodulin-binding Proteins | AT2G36910 | 38.436 | 6.20e-129 | 426 |