Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2065 ATGGAACTGGACGACTGGGACTTGAGCGCAGAGGATCTTGATTCTCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAGCTACGAAATCCTTCTTCCTCTTTTTCTTCTTCCACCTCTGCATCAATTTCTTCTTCTACTCCTTCTAATAGTCAACAATCGAATGTACATCAACAGCATTCTGAAAAACCTTGTGGCAGCCACCTGGAACGATCGCCAGGGAAACCCATTTCTGATTATCGCTCTGAAAGAGTTGAAGCTTTGTCTCCGGGGCCTAGAGTGTTACCCTCGTCATTAAGATCAGGAACAAACAACGATGAAAATTCAAAAGAAATGCCAAAGCTTACTGTCAAATTTTTTCTTCATTCTACTGGAAACATAGCAGCCAAATTTCAATATGACCAGGTAGTAATAGCTGCCATTCGAAGAATCCCTAAATCTACTTGGAATGCTAAAGAGAGGTTATGGATGTTCCCACTATCTTCTTTGTCCATGGCAGAAAAGGTTCTTGGTGAAATATCTGGTTATAATGTTCAGGTGGATAACCTAGACCCCTTAGTACATAGGGCCATTGCCACTGCATCTGCTGTTCTTGATCTTCGAGATCGATATGACAGGATCCCTAGTGATGTTGAATCAAAGCTTTTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATCGCTGTGGCTACATGCATGTGTGACTCATGGCCTGTTCTCATACTTGCACCATCTTCGCTACGTTTGCAATGGGCCTCTATGATTCAACAATGGCTGAATATTCCCCCGTCAGACATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAATAGAGCAGGTTTCACTATAGTATCTTCAAACGCCAAAAGCAGCATTCATCTAGATGGACTATTCAACATCATCTCATATGATTTGGTCCCAAAGCTACAGAATATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGACGAATCTCACTTTTTGAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATTTTGCTTAGTGGAACCCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGATGTATATAAAAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAATTTTTGGAGTCTACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAACGTAGGCAGCAGGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATCAATGCTTTATTTCGAGAGTTAGAGGTGGTTAAAGCCAAAATTAAGGCATCCAAATCACAAGATGAGGCTGAATCACTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACCGAATCTGCAGAAGCCAAGATCCCAGCAGTTCTTGATTATGTTGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTTGTATTTGCACACCATCAGCCAATGATAGATTCAATACATGATTTTCTCCTTAAAAAAAAAGTAGGATGCATCCGGATTGATGGCGGTACACCCCCTGCGTCAAGGCAATCATTGGTTACAGATTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCCATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCCAGCACTGTCATTTTTGCAGAGTTGTCCTGGACTCCAGGAGACCTAATTCAAGCAGAAGACCGTGCTCATAGAATTGGCCAGGTATCTTCTGTAAATATCCACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGATGTAGTGCAGGGAAAATTGGAAAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTGGAGGTCTCAACTAATCAGCCAGAGAATAGCCCTGTGAAGCAGAAAACTCTCGACTCCTTTGTGAGAAGATGTAACAATATGGACGAGCCAGCACATCAGTCCAACCCCAAACGCCCCCGTTACTGA 2121 0.4206 MELDDWDLSAEDLDSLERDAFQKIAQLRNPSSSFSSSTSASISSSTPSNSQQSNVHQQHSEKPCGSHLERSPGKPISDYRSERVEALSPGPRVLPSSLRSGTNNDENSKEMPKLTVKFFLHSTGNIAAKFQYDQVVIAAIRRIPKSTWNAKERLWMFPLSSLSMAEKVLGEISGYNVQVDNLDPLVHRAIATASAVLDLRDRYDRIPSDVESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVATCMCDSWPVLILAPSSLRLQWASMIQQWLNIPPSDILVVLSQSGGSNRAGFTIVSSNAKSSIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKASKSQDEAESLKFTQKNLINKIYTESAEAKIPAVLDYVGTVIEAGCKFLVFAHHQPMIDSIHDFLLKKKVGCIRIDGGTPPASRQSLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQGKLENLGQMLDGHENTLEVSTNQPENSPVKQKTLDSFVRRCNNMDEPAHQSNPKRPRY 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2065 706 Gene3D - 476 700 IPR027417 -
Glsi02g2065 706 FunFam Chromatin remodeling factor18 187 461 - -
Glsi02g2065 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 668 IPR027417 -
Glsi02g2065 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 395 IPR014001 -
Glsi02g2065 706 Pfam Helicase conserved C-terminal domain 522 623 IPR001650 -
Glsi02g2065 706 Pfam SNF2-related domain 232 493 IPR000330 GO:0005524|GO:0140658
Glsi02g2065 706 Coils Coil 466 486 - -
Glsi02g2065 706 MobiDBLite consensus disorder prediction 26 109 - -
Glsi02g2065 706 MobiDBLite consensus disorder prediction 62 81 - -
Glsi02g2065 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 666 IPR001650 -
Glsi02g2065 706 SMART helicmild6 540 623 IPR001650 -
Glsi02g2065 706 Gene3D - 190 443 IPR038718 -
Glsi02g2065 706 SMART ultradead3 210 403 IPR014001 -
Glsi02g2065 706 CDD DEXHc_HARP_SMARCAL1 214 437 - -
Glsi02g2065 706 ProSiteProfiles HARP domain profile. 107 184 IPR010003 -
Glsi02g2065 706 MobiDBLite consensus disorder prediction 95 109 - -
Glsi02g2065 706 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 694 - -
Glsi02g2065 706 Coils Coil 651 671 - -
Glsi02g2065 706 CDD SF2_C_SNF 510 634 - -
Glsi02g2065 706 MobiDBLite consensus disorder prediction 26 61 - -
Glsi02g2065 706 FunFam Chromatin remodeling factor18 472 702 - -
Glsi02g2065 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2065 Glsi-ChrGlsi02 70695833 70710562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2065 513 663 RAD5 or RAD16-like Gene Family AT1G11100 34.437 1.26e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi02g2065 SNF2_N 4.3e-28 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2065 02 70695833 70710562 Glsi02g2065 02 70695833 70710562 ECH