Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2043 ATGCTAACAACTTTTTCTTCCTCCTCCTCTTTGTGCCTCTTAGGTGTTTCTAGAAATACCAGCAGCTCCAGAACTGATGTGAACACTGACCTGAGACTTGGCCTTAGCCTCTCTACATATCAACCTGGCTTTTCCAATTCAATTCTAAGGGATCAAACCTCAGATTGGCCCCCTATTAAGTCCATATTGAAGAGCAACCTTGTCAAGAAACAAAATCCCTCTCTATTTGTCAAAGTCTACCTGGAAGGCATTCCCATAGGTAGAAAATTGAATCTGCTGGCACACCACAGTTATGATGGGCTTGTCAGAGCTCTTTGCGATATGTTTAAGACTACCATTCTCTGCCCTAATTCTCAACCTCTTCATTCTAGAAATTTTTATGTGTTAACTTACGAGCATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTTTTGACCAGTGTGAAAAGGCTCAAGATCACAAGAGCAGACAGATGCTAG 495 0.4263 MLTTFSSSSSLCLLGVSRNTSSSRTDVNTDLRLGLSLSTYQPGFSNSILRDQTSDWPPIKSILKSNLVKKQNPSLFVKVYLEGIPIGRKLNLLAHHSYDGLVRALCDMFKTTILCPNSQPLHSRNFYVLTYEHQEGDWMMVGDVPWEMFLTSVKRLKITRADRC 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2043 164 SUPERFAMILY CAD & PB1 domains 71 158 - -
Glsi02g2043 164 ProSiteProfiles PB1 domain profile. 74 163 IPR000270 GO:0005515
Glsi02g2043 164 Gene3D - 69 164 - -
Glsi02g2043 164 Pfam AUX/IAA family 70 160 IPR033389 -
Glsi02g2043 164 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 162 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2043 Glsi-ChrGlsi02 70386665 70388083 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2043 58 164 B3 DNA Binding Superfamily AT3G61830 30.841 4.61e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi02g2043 AUX_IAA 3e-29 CL0072