Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2041 ATGAGAACAGCAGAACAAATCGAAGCCCGCCATACCCAGTCATCATCTTCTTCATCTTCTTCCATTGATAGCAGCAACTACCCTTCTGGGACATCAGCTCCTTCTTCTTCTTCCTCCTCTTTGTGCCTCTCAGGCGTTTGTAGAAATACCAGCAGCTCCAGAACTGATTTGATAACTGACCTGAGACTTGGTCTTAGCCTCTCTCCTTCTCAACCTGGATTATCCAATTCAATTCTAAGGGATCAAACTTCAGATTGGCCACCAATTAAATCCATATTAAGGAGCACCCTAGTCGAGAAACAAAGACCCTCTTTGTTTGTCAAAGTCTACCTGGAAGGCATTCCCATAGGTAGAAAATTGAACCTGCTGGCACACCACAGTTACGATGGGCTAGTCAGAGCTCTTAGCCATATGTTTAAGACTACCATTCTCTGCCCTAATTCCCAACCACTTCATTCTGGAAATTTTCATGTGTTGACTTATGAGGACAGAGAAGGGGACTGGATGATGGTTGGAGATGTACCATGGGAGATGTTTTTGACCAGTGTGAAAAGGCTGAAGATCACAAGAGCAGACAGATGCTAG 585 0.4444 MRTAEQIEARHTQSSSSSSSSIDSSNYPSGTSAPSSSSSSLCLSGVCRNTSSSRTDLITDLRLGLSLSPSQPGLSNSILRDQTSDWPPIKSILRSTLVEKQRPSLFVKVYLEGIPIGRKLNLLAHHSYDGLVRALSHMFKTTILCPNSQPLHSGNFHVLTYEDREGDWMMVGDVPWEMFLTSVKRLKITRADRC 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2041 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 192 IPR003311 GO:0005634|GO:0006355
Glsi02g2041 194 Gene3D - 99 194 - -
Glsi02g2041 194 Pfam AUX/IAA family 96 190 IPR033389 -
Glsi02g2041 194 ProSiteProfiles PB1 domain profile. 104 193 IPR000270 GO:0005515
Glsi02g2041 194 SUPERFAMILY CAD & PB1 domains 101 188 - -
Glsi02g2041 194 MobiDBLite consensus disorder prediction 8 40 - -
Glsi02g2041 194 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2041 Glsi-ChrGlsi02 70328475 70329837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2041 107 194 B3 DNA Binding Superfamily AT2G46530 32.955 2.94e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi02g2041 AUX_IAA 2.6e-29 CL0072