Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g2034 | ATGTCAATGGAACCTCCTCCTTTCCAAGAATCAGTGCGATGTGATGTCTGCAATTGCAGTTTCAACACCTTCAGGAGACGGCATCACTGTCGATGCTGTGGGAGAACATTGTGCCATGAGCATTCATCAAATCAAATGGCTTTACCACAATTTGGCATTTACTCAAATGTCAGAGTATGTGCTGATTGTTTCAACAACTCAGGATCTGGGAAGTATGATCCTCAGGCTTCTTCAGATGGAGCAAACAGCATAACAAATACAATTTCCAAACTAGACATTGATGCGGATGTACATTCCAAGACCTCACCAACAGAAGAGAGTAATCATGTTTCAGGCATTAAAGATTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCACTCCCTTCCACTGATGCACTCCCCCAGCAGAAATCCACTCCAGTCATTTCAGCTCCCTCAAATCCGAAACCAAAGAAGTCAGATGTGGTTCCTAAAAGTAGAAGCTCCACATCAAATAGCAAGTTTAGTTCTTTCAATCTTGGTCATGTCACCAGTGGTGCCTCAGACAGACCACAGATGGACTATGAAGCTAATGGAGAGGGTTTGAGAGAAGCAATAAAAAATGGTGACATTACTGCTGTCAAAAAGCTTCTAAATGAGGGTGTAGATGCAAATTACAGGGACAAGCAAGGAATGTCTTTATTGCATTTGGCTGCACTCTTCAATCAAACTGATATGGTTTTCATTCTCATGGATTCTGGGGCAAGCCTGCTCTACAAGAATGCACAAGGAGAAACGCCTTTAGATTGTGCACCAGCTACCTTGCAATACAAGATGCGAAAGAAGATGGAAGAAGGGGAGGCAATGGATCAAAGCGTTTGA | 867 | 0.4291 | MSMEPPPFQESVRCDVCNCSFNTFRRRHHCRCCGRTLCHEHSSNQMALPQFGIYSNVRVCADCFNNSGSGKYDPQASSDGANSITNTISKLDIDADVHSKTSPTEESNHVSGIKDCKCGMPLCICEAPLPSTDALPQQKSTPVISAPSNPKPKKSDVVPKSRSSTSNSKFSSFNLGHVTSGASDRPQMDYEANGEGLREAIKNGDITAVKKLLNEGVDANYRDKQGMSLLHLAALFNQTDMVFILMDSGASLLYKNAQGETPLDCAPATLQYKMRKKMEEGEAMDQSV | 288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2034 | 288 | ProSiteProfiles | Ankyrin repeat profile. | 225 | 257 | IPR002110 | GO:0005515 | |
| Glsi02g2034 | 288 | ProSiteProfiles | Ankyrin repeat region circular profile. | 225 | 252 | - | - | |
| Glsi02g2034 | 288 | MobiDBLite | consensus disorder prediction | 159 | 181 | - | - | |
| Glsi02g2034 | 288 | SMART | ANK_2a | 225 | 254 | IPR002110 | GO:0005515 | |
| Glsi02g2034 | 288 | SMART | ANK_2a | 192 | 221 | IPR002110 | GO:0005515 | |
| Glsi02g2034 | 288 | Gene3D | - | 176 | 274 | IPR036770 | - | |
| Glsi02g2034 | 288 | Pfam | Ankyrin repeats (many copies) | 212 | 266 | IPR002110 | GO:0005515 | |
| Glsi02g2034 | 288 | SMART | fyve_4 | 3 | 69 | IPR000306 | GO:0046872 | |
| Glsi02g2034 | 288 | ProSiteProfiles | Ankyrin repeat profile. | 192 | 224 | IPR002110 | GO:0005515 | |
| Glsi02g2034 | 288 | MobiDBLite | consensus disorder prediction | 136 | 187 | - | - | |
| Glsi02g2034 | 288 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Glsi02g2034 | 288 | Pfam | FYVE zinc finger | 9 | 66 | IPR000306 | GO:0046872 | |
| Glsi02g2034 | 288 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Glsi02g2034 | 288 | SUPERFAMILY | Ankyrin repeat | 198 | 267 | IPR036770 | - | |
| Glsi02g2034 | 288 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 70 | IPR013083 | - | |
| Glsi02g2034 | 288 | SUPERFAMILY | FYVE/PHD zinc finger | 9 | 66 | IPR011011 | - | |
| Glsi02g2034 | 288 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 2 | 282 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g2034 | Glsi-ChrGlsi02 | 70248259 | 70256198 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2034 | 203 | 263 | MAP Kinase Kinase Kinase | AT4G18950 | 40.984 | 3.86e-08 | 52.0 |