Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2022 ATGGCATTTCAGGATTTCGACCTCATCACAGAACGAAGAAAAAATGAGAGGAAGCAGAGGCTGAGGAAGAGAATCGCCATTGGTGCAGTTTGCACCATTGTCATTATTGGTCTCGTTGCCGCTGCTTCTTTCGTTGTCATCACCAAAGATGGCGGTAAAGCCAAAGACAGCCATAAAAAATCCCCGTCCCCACCTGCAACTCAACAAGCTACGAGCAAAATTTCACAAAGCGAAAAGATTGTGAAGACGATGTGTAATTCCACAGATTACAAGCAAAAATGCGAGAGCAGCCTTGTGAAGGAAGTTAAGAAGATAAATAATAAGTCTTTACAACCCAAAGATGTTCTTACAATTTCCATTAAAGTCGCAGAGGAAGAACTGAAAAAAGCATTCAACAAGACCACCTCATTGAAGTTCGAATCTGACAAGGACAAAGGAGCGTATGAAGACTGTAAGTCAGTTATTGAGGATGCTAAGGAAGAGTTAGGATTGACGTCATCCCATTTGAGCACACTTGAGCTGAACAAGCTTGCCTCGCATGAATCTGACATAAACAGTTGGCTAAGTGCAGTGATCTCGTACCAGCAAATCTGCATTGATGGGGTTTCTGATGAGAAATTAAGGAATGAAATGCAGGACATTTTTAAGGATGCTCAGGAATATGTGAGCAATTCTCTTGCTTTTGTGTCACAGTTAGCTTCGTTCCTTTCTGGGCTCCAAAAAGGAGTGTCCAATAAACGGAATTTGCTGTCTGAAAAATCCATGTCCCCAGAAGATTCTTTGGACAAAAATAATCATGGACTTCCTGAATGGCTGGTCGACGATGAGGAACGAAGGATGTTGAAGGCAGCAGATGACAAGCCCACGCCTAATGTCACTGTGGCACAAGATGGCAGCGGAAACTACAAAACCATCTCTGAAGCTTTGGCTGCTATCCCTCAAAAATATGAAGGACGGTATGTAGTTTATGTCAAAGCAGGAATATATGAGGAGACTGTGACTGTGGCTAAGAGAATGGGAAACCTAACCATATATGGTGATGGATCACAAAAGAGCGTTATCAGCGGCAACAAGAACTTCGTTGATGGAGTCAGGACCTTCCAAACTGCAACCTTTGTGGTTCTAGGAGAAGGATTCATAGGCAAAGCAATGGGGTTCAGAAACACTGCAGGCCCCGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCAGATGGCGCAGTCTTTGTGAACTGTCGTTTTGAAGGGTACCAAGACACTCTATACGTCCAAACCCACAGGCAATTCTACCGAAGCTGCGTCATCTCCGGCACGGTGGACTTCATCTTTGGGGACGCAGCCGCGGTTTTCCAGAACTGCATAATGCAAATAAGGAAGCCACTGGAGAATCAACAGAACATAATCACAGCTCAAGGAAGAGCAGACAAGCGCCAAACCACAGGCATAGTTTTGCAGAATTGCGTCATCCGACCTGACGAGTCCCTCACCCCAGAGAAAAGCAAATTCAAAAGCTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCGTGATGGAATCCCAAATCGAAGACGTCATTGACCCAGCTGGGTGGATGCCATGGGCAGGAGACTTTGCACTAAGCACATTGTACTATGCAGAGTTCAAGAACACAGGACCTGGTTCAGGCACTGATAATAGAGTAAAGTGGCCCGGGTACAAAGTCATAAACAAAGAAGAAGCTAGCAAGTTCACTGTGGAATCGTTCTTGGTTGGGGATTGGATAAGTGGGACAGGCGTGCCTGCTCAGAGGGGCTTGTATAGCTAA 1809 0.4549 MAFQDFDLITERRKNERKQRLRKRIAIGAVCTIVIIGLVAAASFVVITKDGGKAKDSHKKSPSPPATQQATSKISQSEKIVKTMCNSTDYKQKCESSLVKEVKKINNKSLQPKDVLTISIKVAEEELKKAFNKTTSLKFESDKDKGAYEDCKSVIEDAKEELGLTSSHLSTLELNKLASHESDINSWLSAVISYQQICIDGVSDEKLRNEMQDIFKDAQEYVSNSLAFVSQLASFLSGLQKGVSNKRNLLSEKSMSPEDSLDKNNHGLPEWLVDDEERRMLKAADDKPTPNVTVAQDGSGNYKTISEALAAIPQKYEGRYVVYVKAGIYEETVTVAKRMGNLTIYGDGSQKSVISGNKNFVDGVRTFQTATFVVLGEGFIGKAMGFRNTAGPEKHQAVAARVQADGAVFVNCRFEGYQDTLYVQTHRQFYRSCVISGTVDFIFGDAAAVFQNCIMQIRKPLENQQNIITAQGRADKRQTTGIVLQNCVIRPDESLTPEKSKFKSYLGRPWKEYSRTIVMESQIEDVIDPAGWMPWAGDFALSTLYYAEFKNTGPGSGTDNRVKWPGYKVINKEEASKFTVESFLVGDWISGTGVPAQRGLYS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2022 602 FunFam Pectinesterase 77 233 - -
Glsi02g2022 602 Pfam Plant invertase/pectin methylesterase inhibitor 80 227 IPR006501 GO:0004857
Glsi02g2022 602 MobiDBLite consensus disorder prediction 52 75 - -
Glsi02g2022 602 FunFam Pectinesterase 285 600 - -
Glsi02g2022 602 SMART PMEI_2 76 228 IPR006501 GO:0004857
Glsi02g2022 602 MobiDBLite consensus disorder prediction 61 75 - -
Glsi02g2022 602 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 234 IPR035513 -
Glsi02g2022 602 PANTHER PECTINESTERASE 42 590 - -
Glsi02g2022 602 CDD PMEI-like_3 83 234 - -
Glsi02g2022 602 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 232 IPR035513 -
Glsi02g2022 602 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Glsi02g2022 602 NCBIfam pectinesterase inhibitor domain 72 232 IPR006501 GO:0004857
Glsi02g2022 602 SUPERFAMILY Pectin lyase-like 289 590 IPR011050 -
Glsi02g2022 602 Gene3D - 285 600 IPR012334 -
Glsi02g2022 602 Pfam Pectinesterase 291 587 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2022 Glsi-ChrGlsi02 70049949 70052763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2022 1 601 Carbohydrate Esterase AT2G26450 49.527 0.0 610