Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1996 ATGATTCTGATGGAACTCAAGTTCGCAGCTCTGCAATTTGTTATCCTTCTGGTTGCTTCATTTGCTTTCCATGCCCGCGCCTCCAATGCGACAGTAAATGAGACGACTTGTGGTTTCTTCAATGGTTCTCAGAATAGAGACAGTGGAGAACCATGCCCAACTGGTTGGGTTATTGGCCCTGATAAAGTTAAGTGCTTTCATCGTGTTGGGAAGCGACAATCTTGGAATGAGTCAGAGACCTGTTGTAATAAATATGGTGGACATTTAGCTTCTTTGATATCACTTCCAGAACTACACATTGCTCAGAGTCTATGTGGTGGAGTTATTAACGGTTGCTGGGTTGGAGGAAGAAAACTTAACTCTACAGCTGGTTATGAGTGGGTGTGGTCAGATAATTCTCAATGGAATGATACTATGTTTCCTTTGTCACTTGATTCGTCTAATTGTACTGCTCTATCCTGCCCCAAGAAAAGTGCAGAAAATTTATGTACAATAATGAATAATCATTCAAATTCTCTCACAATAGATAGATGCAACAATCCTCATGCTTCAGTATGTGTACTTGATATAGATACAAAATGTTATCACATGCGCTGTCACAGGGAATACCTTATCATCCTTGCAGGGGTGAGCGCTTTAATCCTCTGCACAACATTAGCCGTTGTGGTATGGCTTCTTGCTCATAAGCGGAGCAAGAAGAGAAAACGATCTAGAAAACTATCTAATACAGCAACTTCTCAATTAGTTCCTCCATCATGGAAAGTCTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAACTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGACTGGTGGTACATACAGTGCAGTCCTACCTGATGGCTCAAGGGTTGCAGTCAAGAGGTTAAAGAGGTCAACTTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGTAGGGTTGCAAGGCTTCGCCATCCAAATTTGGTGGCTGTGAAGGGATGCTGCTATGATCATGGTGATCGCTACATTGTTTATGAGTTTGTAGTTAATGGCCCCTTGGATAAATGGCTATATCATATACCAAGGGGAGGTCGCAGCTTAGACTGGGCTATGAGGATGAAAATTGCCACAACACTTGCCCAAGGAATTGCGTTTCTACATGACAAGGTCAAGCCACATGCTGTGCATCGAGACATACGTGCCAGTAATGTGCTGCTGGATGAGGAGTTTGGAGCTCACCTTATGGGTGTTGGTCTATCCAAGTTTGTGCCATATGAAGTTATGCATGAGAGGACTGTGATGGCTGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACAGAAATGAGCTGACAACAAAGAGTGATGTTTACAGTTTTGGGGTCCTGTTACTTGAAATAGTGAGTGGACGTAGACCTGCACAGGCAGTTGATTCAGTGGGTTGGCAGAGTATATTTGAATGGGCAACGCCTCTTGTGCAAGCACATCGCTATCCAGATCTCTTGGATCCTCATATATCTTCCTCATCTTCTAATATCCCAGAGGCTAGTGCCATTCAGAAGGTGGTTGATCTTGTCTATTCCTGCACACAGCATGTCCCATCTATGCGCCCGCGAATGTCCCATGTTGTTCACCAGCTGCAACAATTTGCTCAGCCACCGGCAAAGTGA 1665 0.4354 MILMELKFAALQFVILLVASFAFHARASNATVNETTCGFFNGSQNRDSGEPCPTGWVIGPDKVKCFHRVGKRQSWNESETCCNKYGGHLASLISLPELHIAQSLCGGVINGCWVGGRKLNSTAGYEWVWSDNSQWNDTMFPLSLDSSNCTALSCPKKSAENLCTIMNNHSNSLTIDRCNNPHASVCVLDIDTKCYHMRCHREYLIILAGVSALILCTTLAVVVWLLAHKRSKKRKRSRKLSNTATSQLVPPSWKVFTKEELRSITKNFSEGNRLVGDAKTGGTYSAVLPDGSRVAVKRLKRSTFQRKKEFYSEIGRVARLRHPNLVAVKGCCYDHGDRYIVYEFVVNGPLDKWLYHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHAVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPDLLDPHISSSSSNIPEASAIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPAK 554
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1996 554 SMART tyrkin_6 268 545 IPR020635 GO:0004713|GO:0006468
Glsi02g1996 554 Pfam Protein tyrosine and serine/threonine kinase 290 545 IPR001245 GO:0004672|GO:0006468
Glsi02g1996 554 Pfam Lectin C-type domain 72 187 IPR001304 -
Glsi02g1996 554 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 345 554 - -
Glsi02g1996 554 SMART CLECT_2 52 187 IPR001304 -
Glsi02g1996 554 ProSiteProfiles C-type lectin domain profile. 61 187 IPR001304 -
Glsi02g1996 554 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 111 547 - -
Glsi02g1996 554 Gene3D - 39 189 IPR016186 -
Glsi02g1996 554 SUPERFAMILY C-type lectin-like 38 189 IPR016187 -
Glsi02g1996 554 FunFam C-type lectin receptor-like tyrosine-protein kinase 246 344 - -
Glsi02g1996 554 Gene3D Transferase(Phosphotransferase) domain 1 345 550 - -
Glsi02g1996 554 Gene3D Phosphorylase Kinase; domain 1 227 344 - -
Glsi02g1996 554 ProSiteProfiles Protein kinase domain profile. 269 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1996 554 CDD CLECT 64 186 - -
Glsi02g1996 554 SUPERFAMILY Protein kinase-like (PK-like) 242 545 IPR011009 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi02g1996 Glsi-ChrGlsi02 69574864 69579545 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1996 82 551 Receptor kinase-like Gene Family AT1G52310 69.474 0.0 645
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Glsi02g1996 PK_Tyr_Ser-Thr 1.1e-38 CL0016