LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g1996	ATGATTCTGATGGAACTCAAGTTCGCAGCTCTGCAATTTGTTATCCTTCTGGTTGCTTCATTTGCTTTCCATGCCCGCGCCTCCAATGCGACAGTAAATGAGACGACTTGTGGTTTCTTCAATGGTTCTCAGAATAGAGACAGTGGAGAACCATGCCCAACTGGTTGGGTTATTGGCCCTGATAAAGTTAAGTGCTTTCATCGTGTTGGGAAGCGACAATCTTGGAATGAGTCAGAGACCTGTTGTAATAAATATGGTGGACATTTAGCTTCTTTGATATCACTTCCAGAACTACACATTGCTCAGAGTCTATGTGGTGGAGTTATTAACGGTTGCTGGGTTGGAGGAAGAAAACTTAACTCTACAGCTGGTTATGAGTGGGTGTGGTCAGATAATTCTCAATGGAATGATACTATGTTTCCTTTGTCACTTGATTCGTCTAATTGTACTGCTCTATCCTGCCCCAAGAAAAGTGCAGAAAATTTATGTACAATAATGAATAATCATTCAAATTCTCTCACAATAGATAGATGCAACAATCCTCATGCTTCAGTATGTGTACTTGATATAGATACAAAATGTTATCACATGCGCTGTCACAGGGAATACCTTATCATCCTTGCAGGGGTGAGCGCTTTAATCCTCTGCACAACATTAGCCGTTGTGGTATGGCTTCTTGCTCATAAGCGGAGCAAGAAGAGAAAACGATCTAGAAAACTATCTAATACAGCAACTTCTCAATTAGTTCCTCCATCATGGAAAGTCTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAACTTCAGTGAAGGTAACCGTCTTGTTGGGGATGCCAAGACTGGTGGTACATACAGTGCAGTCCTACCTGATGGCTCAAGGGTTGCAGTCAAGAGGTTAAAGAGGTCAACTTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGTAGGGTTGCAAGGCTTCGCCATCCAAATTTGGTGGCTGTGAAGGGATGCTGCTATGATCATGGTGATCGCTACATTGTTTATGAGTTTGTAGTTAATGGCCCCTTGGATAAATGGCTATATCATATACCAAGGGGAGGTCGCAGCTTAGACTGGGCTATGAGGATGAAAATTGCCACAACACTTGCCCAAGGAATTGCGTTTCTACATGACAAGGTCAAGCCACATGCTGTGCATCGAGACATACGTGCCAGTAATGTGCTGCTGGATGAGGAGTTTGGAGCTCACCTTATGGGTGTTGGTCTATCCAAGTTTGTGCCATATGAAGTTATGCATGAGAGGACTGTGATGGCTGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACAGAAATGAGCTGACAACAAAGAGTGATGTTTACAGTTTTGGGGTCCTGTTACTTGAAATAGTGAGTGGACGTAGACCTGCACAGGCAGTTGATTCAGTGGGTTGGCAGAGTATATTTGAATGGGCAACGCCTCTTGTGCAAGCACATCGCTATCCAGATCTCTTGGATCCTCATATATCTTCCTCATCTTCTAATATCCCAGAGGCTAGTGCCATTCAGAAGGTGGTTGATCTTGTCTATTCCTGCACACAGCATGTCCCATCTATGCGCCCGCGAATGTCCCATGTTGTTCACCAGCTGCAACAATTTGCTCAGCCACCGGCAAAGTGA	1665	0.4354	MILMELKFAALQFVILLVASFAFHARASNATVNETTCGFFNGSQNRDSGEPCPTGWVIGPDKVKCFHRVGKRQSWNESETCCNKYGGHLASLISLPELHIAQSLCGGVINGCWVGGRKLNSTAGYEWVWSDNSQWNDTMFPLSLDSSNCTALSCPKKSAENLCTIMNNHSNSLTIDRCNNPHASVCVLDIDTKCYHMRCHREYLIILAGVSALILCTTLAVVVWLLAHKRSKKRKRSRKLSNTATSQLVPPSWKVFTKEELRSITKNFSEGNRLVGDAKTGGTYSAVLPDGSRVAVKRLKRSTFQRKKEFYSEIGRVARLRHPNLVAVKGCCYDHGDRYIVYEFVVNGPLDKWLYHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHAVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPDLLDPHISSSSSNIPEASAIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPAK	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g1996	554	SMART	tyrkin_6	268	545	IPR020635	GO:0004713\|GO:0006468
	Glsi02g1996	554	Pfam	Protein tyrosine and serine/threonine kinase	290	545	IPR001245	GO:0004672\|GO:0006468
	Glsi02g1996	554	Pfam	Lectin C-type domain	72	187	IPR001304	-
	Glsi02g1996	554	FunFam	C-type lectin receptor-like tyrosine-protein kinase At1g52310	345	554	-	-
	Glsi02g1996	554	SMART	CLECT_2	52	187	IPR001304	-
	Glsi02g1996	554	ProSiteProfiles	C-type lectin domain profile.	61	187	IPR001304	-
	Glsi02g1996	554	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	111	547	-	-
	Glsi02g1996	554	Gene3D	-	39	189	IPR016186	-
	Glsi02g1996	554	SUPERFAMILY	C-type lectin-like	38	189	IPR016187	-
	Glsi02g1996	554	FunFam	C-type lectin receptor-like tyrosine-protein kinase	246	344	-	-
	Glsi02g1996	554	Gene3D	Transferase(Phosphotransferase) domain 1	345	550	-	-
	Glsi02g1996	554	Gene3D	Phosphorylase Kinase; domain 1	227	344	-	-
	Glsi02g1996	554	ProSiteProfiles	Protein kinase domain profile.	269	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g1996	554	CDD	CLECT	64	186	-	-
	Glsi02g1996	554	SUPERFAMILY	Protein kinase-like (PK-like)	242	545	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g1996	Glsi-ChrGlsi02	69574864	69579545	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g1996	82	551	Receptor kinase-like Gene Family	AT1G52310	69.474	0.0	645

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_C-LEC	Glsi02g1996		PK_Tyr_Ser-Thr	1.1e-38	CL0016