Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1994 ATGGGGACGAAGAGAAGCGAGAATCCCAGTAAAGAAGTGATGGAGAAGAAGGCGAAGAAGAATGATGCTGCAAAGAATGAAGGAAAAGAAGGCAATATTTTTGCTTCTTGCTCTTTCTCCAGCCTAGGACTCCACCCTACCTTATGCGACGAGCTCCGAGAAAGAATGGGTTTTGAAGTTCCAACCTTAGTACAAGCTCAAGCCATTCCTGTTATTCTCTCAGGGCGTCATGTACTCGTTAATGCTGCCACCGGCACCGGGAAGACTGTTGCGTACTTGGCTCCGATTGTTCATCATTTGCAGAATTGTGATAACCGAATCCAGCGGTCTGATGGAACATACGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATACATTATGGGTGGTGAAAATAGATCAAAGGAAAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCGTCATTCTCGTACACAAATTTGCGCTGGATAATCTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTGGATCATTTAGGTACAACGAAAACAGGGTATGCTAACGAAGAGAATGCGGTTACAAGACACTCTGGAGTTCCAAAACAGAGTTTGCTCTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCTAAAATTAGTCTAGATAATCCTGTGATGATTGGTCTTGATGGCAAAAGAACAGAACCAATTTCAACAATTGAAAGGCTTGGTCCATCAGGATCTGATGAGGAGAATGAAAACAATGAAGATAAGTATCCCAGTAAAACACTGAGCTCGCAAGTTGGAGATTATAAAGTCCCCACACAATTGGTTCAGAGATATGTTAAAGTACCTTGTGGTTCGCGTCTGGTGGTACTTCTTTCCATTCTGAAATATCTTTTTAAAGGGGAAGCATCACAAAAGATTGTGGTATTCTTTTCGACATGCGATGCAGTAGATTTTCACTTTTCACTGTTAAGTGAATTCCAATTTTCATCTCATCTGAATTCAGAAGGAGATATTAGACAGATGTTTCTTGGATGCAAAACATTCCAGTTGCATGGGAATATGGATCAGGAGGACCGGAGGACAACTTTTCAGACTTTTAAAACAGAGAAATCAGCTCTGCTCTTTTCCACTGATGTTTCTGCTAGAGGCTTGGATTTTCCAAAAGTTAGATGCATTATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTTTGCAGCCAGCTGAAATAGATTATTTACAGGACTTGGAAAAACATGGTGTATCACTCACAGAGTTTCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTATATGGTCAAAAGAACCATATCCGGAAGTTTGTTTCCGTAGAGTCACATCCCTGGGTGGTTTGTCTCCAGAAGGCACTTGAATCCTTCATCATGTCTAAGCCGAAGATGGATAAACTTGCCAGGACGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCCCATAGGGGTGAATTGAAAAAGATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCATTAAAACAACAGCCTTCTTTAGTTGGAAAATCATACCAAAAGCAAACTAAGAGGAAGAGACATCAGAAGCATAGTGGGCTGTCCAAAAGGAGAAAGGTTGCCAGTGTACTTAAAGCATCATGA 1845 0.4108 MGTKRSENPSKEVMEKKAKKNDAAKNEGKEGNIFASCSFSSLGLHPTLCDELRERMGFEVPTLVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIVHHLQNCDNRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFSYTNLRWIIFDEADRILELGFGKEIKEILDHLGTTKTGYANEENAVTRHSGVPKQSLLLSATLNEKVNHLAKISLDNPVMIGLDGKRTEPISTIERLGPSGSDEENENNEDKYPSKTLSSQVGDYKVPTQLVQRYVKVPCGSRLVVLLSILKYLFKGEASQKIVVFFSTCDAVDFHFSLLSEFQFSSHLNSEGDIRQMFLGCKTFQLHGNMDQEDRRTTFQTFKTEKSALLFSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLEKHGVSLTEFPLLKVLDSFPLYGQKNHIRKFVSVESHPWVVCLQKALESFIMSKPKMDKLARTGFCSWVRAYTAHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVGKSYQKQTKRKRHQKHSGLSKRRKVASVLKAS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1994 614 MobiDBLite consensus disorder prediction 587 605 - -
Glsi02g1994 614 SMART helicmild6 373 456 IPR001650 -
Glsi02g1994 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 265 IPR027417 -
Glsi02g1994 614 MobiDBLite consensus disorder prediction 582 614 - -
Glsi02g1994 614 SMART DUF4217_3 518 583 IPR025313 -
Glsi02g1994 614 Pfam Helicase conserved C-terminal domain 333 456 IPR001650 -
Glsi02g1994 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 503 IPR001650 -
Glsi02g1994 614 CDD SF2_C_DEAD 315 465 - -
Glsi02g1994 614 CDD DEADc_DDX31 48 266 - -
Glsi02g1994 614 Gene3D - 326 609 IPR027417 -
Glsi02g1994 614 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Glsi02g1994 614 Gene3D - 2 268 IPR027417 -
Glsi02g1994 614 Pfam Domain of unknown function (DUF4217) 520 580 IPR025313 -
Glsi02g1994 614 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Glsi02g1994 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 265 IPR014001 -
Glsi02g1994 614 SMART ultradead3 57 278 IPR014001 -
Glsi02g1994 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 494 IPR027417 -
Glsi02g1994 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Glsi02g1994 614 PANTHER RNA HELICASE 23 571 - -
Glsi02g1994 614 MobiDBLite consensus disorder prediction 1 25 - -
Glsi02g1994 614 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1994 Glsi-ChrGlsi02 69562181 69567586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1994 12 487 Eukaryotic Initiation Factors Gene Family AT5G11200 26.337 5.42e-31 124