Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1993 ATGTCGGCTTGTTCACATAAAGGAAAAAGCTGTCTTGCTTTTGTTCAGCCTCTGGTTTCCCGGCGACAAGTCAGTTTTCTCAACTTCGATCCCGGCGACAAGTCAGTTTTCTCAACTTCGATCCCGGCGACAATATTCTGTTACCCTAGTCCTGGGGAAGAGAACTACCCATTTCCTGTTTTTCCATTTGGATTACTTCTGTCCCTCTCTTTCTTCATCGCCGGTAATGGATATGGTGGCCGGAGGGGGAGGCTTCGTGTTGAGTTTCTTCTAGTTCTTCAATTTGGAACTTGTGGGGTGGAGGCAAAGCCAGCACTTAGTAGCATTTCTGGAAAAAGGGTCGGGTTTTGGTCAATTCTACTCGATGTCGTAATGAAGGCTCTACCGAACGGTTTCTTGCCTAATTCTGGCGAAGTGGAAAGAAAGATGATCAATTCAGAGTTATGGCATGCATGTGCTGGACCACTGGTTTCCTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGATATCGTACCTAGTTACCCTAACCTTCCATCCAAGTTGACTTGCATGCTTCACAATGTTGCACTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATTTGACAAGGAAGCACTACTGGCATCAGACATTGGCCTGAAGCAAAACCGACAACCTACTGAGTTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCAGAGAAAATATTTCCACCTTTGGATTTCTCAATGCAACCTCCCGCTCAAGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACGTTCAGACATATTTATCGCGGACAACCGAAGAGGCATCTACTGACTACCGGTTGGAGTGTCTTTGTGAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTCTAGGTATAAGGCGGGCTAATAGACAGCAGCCTGCTCTCTCTTCATCAGTCATATCCAGTGACAGTATGCATATTGGCATTCTTGCTGCAGCAGCTCATGCTGCTTCAAATAACAGCCCATTCACCATATTTTACAATCCAAGGGCCAGCCCTTCTGAATTTGTTATTCCAATGGCCAAGTATAATAAAGCCTTGTACACCCAGGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCTGGAGTACGCAGATACATGGGTACAATCACAGGGATCAGTGACTTAGATCCCGTGCGATGGAAAAATTCGCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGTCCAAGCAGAGTTTCAATTTGGGACATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGACCCAAGTTTCCCAAGCAACCAGGAATGCCAGATGATGAGTTTGACATGGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGAATTTGGCATGAAGGATGCATCAAGTTCAATCTTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTTTCTGCTACTCAATCAGGAATTTTCCCACCCATGGTTTCATCTAATTCCCTTCATAATAACCTTAACACTGATGATCCATCCAAATTATTGAGTTTTCAAGCCAGCCCAAATCTTCAGTTTAACAAACTTAATTTACCAAACCAAGTCAACCAATTGCAACAGTCCCCGGCATTTTGGCCTCAACAGCAGCAGCAGCTGCAATCAATGTTACAAACTCCCTTAAACCAGCTCCAGCAGCAGAGGCAGCAACAGCAGCTTCCTGAACCACAAAATCTGCAACATCCGCAGCAACAGCCACAATTGCATCAACAGCGAGCACAGCAGCAGCAGCCACAGCCACAGCAGCAACAACAACAGCAACAGTCCTGTCAACAGGCCATTATAAATAATGGAGTGGTTGGTTCTGGCCACATGTCAAATCAGAGTGTGCAGCAACCAGTAACCTACTCTCAACTTCAGCAACAGCAATTACTCTCAGGCAGTATCCCTCTCCAGCAAAGTATCCAATCGGCTAGTAAGAATACATTTCCACTCACGACCTTACCTCAAGATTCACAATTTCAGCAACAGATGGACCAGCAAGCCAGTCTTTTACAGAGGCAACAGCAACAATCTCCATTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGTACCGCAACAACCACAACTAACTCAACTACCCCAGCAAAACCTCTCGGAGCAACAACTGCAGTTACAGTTGCTACAGAAATTGCAGCAGCAACAGCAACAGCAACAGCAGCCACAGCAGCAGCAGCAACTTCTTTCCCCAGCAAGCCCACTTTTGCAACCTCAGCTGCTACAGCCACAACATGCTCACCTACAAAACCAGCAACTACCACAGCTGCCTATGTCTCAGCATCAACCTCAACAGCTTAGTAACAATGCATTCTCGACAGAGAAGCTTCTGAACAGCAATAGCTTCTCTTCGTCAGCTCTGATGCAATCACAACAGCTTCCTGTGAACCAACCCCAGAACACACAGAAACCACTTACAACTACTAGAGCTCCTTCAAGCCTTACAGATGGAGATGCCCCATCATGTTCAACCTCACCATCAACTAATAACTGCCAGGTATCTCCACCAAACCTCCTGAAGAGAAATCAACAAGTACCATCCACATTAGGGGGGAACTTGGTAGTTGATCCCACTAGTAATCTGGTACAGGAGCTTCAGAATAAGCCTGACGTCCACATCAAACATGAGTTGCCTGGTGTAAAAGGACTTGACCAGCTAAAGTATAAAGGGACAATAACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTTGCAGTGTCCAGCCAAACTTCCCACTTCCCAACTTCTGTGTGGATGGGGATGTCCAATCGCATCCTAGGAACAATCTACCATTTTCCTCTCATCTTGATGGATTAGCGCCTGATACTTTGCTCTCAAGAGGGTATGACTCTCAAAAAGATCTTCAAAATTTGCTCTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGCTCACAGTCATTTGGAGTGCCAAACATGCCCTTTAAGCCTGGCTGCTCAAGTGATGTTGCCATCACTGAAACTGGGGTTTTGAATAATAGCTTGTGGACTAACCAAACTCAACGCATGCGAACATATACTAAGGTTCAGAAGCGTGGATCTGTTGGAAGATGTATTGATGTCAACCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGTATGTTCGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGCGACGACCCGTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGTTGAAGTTCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCTCCAATCAAGCTTGTAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCGGCCGCCTCATTTAACCGATAA 3711 0.4514 MSACSHKGKSCLAFVQPLVSRRQVSFLNFDPGDKSVFSTSIPATIFCYPSPGEENYPFPVFPFGLLLSLSFFIAGNGYGGRRGRLRVEFLLVLQFGTCGVEAKPALSSISGKRVGFWSILLDVVMKALPNGFLPNSGEVERKMINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADIVPSYPNLPSKLTCMLHNVALHADPETDEVYAQMTLQPVNKFDKEALLASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPMAKYNKALYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDEFDMENAFKRAMPWLGDEFGMKDASSSIFPGLSLVQWMSMQQNNQFSATQSGIFPPMVSSNSLHNNLNTDDPSKLLSFQASPNLQFNKLNLPNQVNQLQQSPAFWPQQQQQLQSMLQTPLNQLQQQRQQQQLPEPQNLQHPQQQPQLHQQRAQQQQPQPQQQQQQQQSCQQAIINNGVVGSGHMSNQSVQQPVTYSQLQQQQLLSGSIPLQQSIQSASKNTFPLTTLPQDSQFQQQMDQQASLLQRQQQQSPLQLLQQSLSQRVPQQPQLTQLPQQNLSEQQLQLQLLQKLQQQQQQQQQPQQQQQLLSPASPLLQPQLLQPQHAHLQNQQLPQLPMSQHQPQQLSNNAFSTEKLLNSNSFSSSALMQSQQLPVNQPQNTQKPLTTTRAPSSLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQVPSTLGGNLVVDPTSNLVQELQNKPDVHIKHELPGVKGLDQLKYKGTITDQLEASSSGTSYCLDPCSVQPNFPLPNFCVDGDVQSHPRNNLPFSSHLDGLAPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDVAITETGVLNNSLWTNQTQRMRTYTKVQKRGSVGRCIDVNRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQQMSLDGDLGNVPISNQACSGTDSGNAWRGQYDDNSAASFNR 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1993 1236 Pfam B3 DNA binding domain 250 351 IPR003340 GO:0003677
Glsi02g1993 1236 MobiDBLite consensus disorder prediction 626 673 - -
Glsi02g1993 1236 Pfam Auxin response factor 376 458 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi02g1993 1236 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 140 708 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi02g1993 1236 SMART B3_2 250 352 IPR003340 GO:0003677
Glsi02g1993 1236 ProSiteProfiles PB1 domain profile. 1109 1202 IPR000270 GO:0005515
Glsi02g1993 1236 FunFam Auxin response factor 248 352 - -
Glsi02g1993 1236 Gene3D - 413 484 - -
Glsi02g1993 1236 Coils Coil 784 804 - -
Glsi02g1993 1236 CDD B3_DNA 249 341 IPR003340 GO:0003677
Glsi02g1993 1236 Gene3D - 1104 1198 - -
Glsi02g1993 1236 ProSiteProfiles B3 DNA-binding domain profile. 250 352 IPR003340 GO:0003677
Glsi02g1993 1236 SUPERFAMILY CAD & PB1 domains 1121 1187 - -
Glsi02g1993 1236 MobiDBLite consensus disorder prediction 868 921 - -
Glsi02g1993 1236 FunFam Auxin response factor 413 485 - -
Glsi02g1993 1236 SUPERFAMILY DNA-binding pseudobarrel domain 240 379 IPR015300 -
Glsi02g1993 1236 Pfam AUX/IAA family 1106 1195 IPR033389 -
Glsi02g1993 1236 Gene3D - 248 351 IPR015300 -
Glsi02g1993 1236 FunFam Auxin response factor 1104 1198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1993 Glsi-ChrGlsi02 69532512 69541337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1993 125 610 B3 DNA Binding Superfamily AT1G19220 82.317 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi02g1993 AUX_IAA 2.9e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1993 02 69532512 69541337 Glsi02g1993 02 69532512 69541337 ECH