Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1992 ATGGCGACCGCTCAGCTCACAGCATCATCACTTTCTACTATGAATTTGGCATCGTTCGAAGGCCTTCGACCTTCGGCTGTTCATTTTGCTTCTGTCGGTCATGTAAGATTAGGCGGTCTCACCCAAAGGTCGTTCCGGGGTTTGGTCGTCAAAGCCGCAACTGTTGTAGCCCCAAAGTACACCTCTATTAAGCCTTTGGGTGACAGAGTGCTGGTAAAAATTAAGGAAGCGGAGGAGAAGACCGAGGGTGGGATCTTACTCCCTTCTACTGCTCAAACAAAGCCTCAAGGTGGTGAGGTGGTTGCTATTGGAGAGGGAAAGACAGTTGGGAAGAACAAAGTAGATATTACTGTGAAGACAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTGCAAAGCATCTTATACTGAAAGATGATGACATTGTTGGTATCCTTGAAACAGATGATGTCAAGGATCTTAAACCATTAAATGATAGAGTCTTAATCAAGGTTGCAGAGGCTGAGGAAAAAACTTCAGGGGGTTTGTTGCTGACAGAGGCAACAAAAGATAAACCATCTATTGGAACGGTGATAGCTGTTGGACCTGGGCCTCTGGATGAGGAAGGCAACAGAAAACCATTGTCCGTTACCCCTGGGAACACTGTTTTGTACTCCAAATACGCTGGGAATGAATTCAGGGGCAATGACAGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTCATGGCTGTCCTCTCTTAG 765 0.4641 MATAQLTASSLSTMNLASFEGLRPSAVHFASVGHVRLGGLTQRSFRGLVVKAATVVAPKYTSIKPLGDRVLVKIKEAEEKTEGGILLPSTAQTKPQGGEVVAIGEGKTVGKNKVDITVKTGAQVVYSKYAGTEVEFNGAKHLILKDDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVIAVGPGPLDEEGNRKPLSVTPGNTVLYSKYAGNEFRGNDSSDYIALRASDVMAVLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1992 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Glsi02g1992 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Glsi02g1992 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Glsi02g1992 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Glsi02g1992 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 FunFam 10 kDa chaperonin 158 254 - -
Glsi02g1992 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Glsi02g1992 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Glsi02g1992 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Glsi02g1992 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0044183
Glsi02g1992 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Glsi02g1992 254 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1992 Glsi-ChrGlsi02 69528388 69530354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1992 1 254 Calmodulin-binding Proteins AT5G20720 76.953 1.81e-138 387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1992 02 69528388 69530354 Glsi02g1992 02 69528388 69530354 ECH