Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1985 ATGGTGAAGCAGACCATCGAAAAGCCGGCGGATCGAGGCGATTCCAAGTTCAGGGGGGTCCGAAAGAGAAAGTGGGGCAAATGGGTTTCCGAAATTAGACTTCCTAACAGTAGGGAGAGGATTTGGTTGGGATCCTACGACTCCGCCGAGAAGGCGGCTCGCGCTTTCGACGCAGCCATGTTTTGCTTACGTGGCCGCTCCGCCAACTTTAATTTCCCCGATAACCCACCTGACATCTCCGGCGGCAGGTCTATGTCCCGTTCTCAAATTCAGGCCGCTGCGGCCCGTTTTGCCAACTCGGAGCCCCAGATGGATCAGTCGGGTAAATCCATGACTGGCTTGCCTATGGAATCTCGGTCTCCTACCCTTTCGGAAGGGACGGCCTTGCCAATGGAATCTCCTTCACCCTCCCTTTCGGAGGGGACCGTGCAGACGGACAGTGAAGTCACTCTAAACGAGTCGGTTCCGAATTTGTTTACGGCCATAGGATCGGGTAATTTTGCACCGGAATATGGGATGTTCGCGGGTTTTGATGATTTTAACTCTGATTTCTACATACCGGAAATGCCCAGCGTGGATTATGGAGAAGAAAATATGGATGGGTTGATAATTGAAGACTCATTCTTGTGGAATTTTTGA 639 0.5164 MVKQTIEKPADRGDSKFRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAAMFCLRGRSANFNFPDNPPDISGGRSMSRSQIQAAAARFANSEPQMDQSGKSMTGLPMESRSPTLSEGTALPMESPSPSLSEGTVQTDSEVTLNESVPNLFTAIGSGNFAPEYGMFAGFDDFNSDFYIPEMPSVDYGEENMDGLIIEDSFLWNF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1985 212 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Glsi02g1985 212 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Glsi02g1985 212 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 MobiDBLite consensus disorder prediction 72 147 - -
Glsi02g1985 212 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 MobiDBLite consensus disorder prediction 81 147 - -
Glsi02g1985 212 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Glsi02g1985 212 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Glsi02g1985 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1985 Glsi-ChrGlsi02 69480282 69480920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1985 15 212 AP2-EREBP Transcription Factor Family AT1G19210 52.657 1.86e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g1985 AP2 8.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1985 02 69480282 69480920 Glsi02g1985 02 69480282 69480920 ECH