Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1982 ATGCAGCAACAGAGGCTAAAACAACACCCGATGATGCAGCAGTCTCTCTACCACCATCCTGGTCTCCTTGCAGCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTGTACGTTGGCAACATTCATCCTCAGGTTACAGAATCTCTTCTTCAAGAGGTTTTCTCAAGTACGGGTCCCCTTGAAGGCTGCAAGCTCATTAGGAAAGACAAGTCTTCGTATGGATTTGTGGATTACTTTGATCGCAGATCAGCTGCGCTTGCTATTGTAACTCTCAATGGGAGGCATATTTTTGGGCTGCCTATTAAAGTTAACTGGGCATATGCTAGCAGTCAGAGGGAGGATACATCAGGTCACTTTAATGTTTTTGTCGGTGATCTTAGCCCTGAAGTTACAGATGCTACATTGTTTGCTTGCTTCTCTGTATATCCTAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAGACAGGCCGCTCCAGGGGATTTGGTTTTGTTTCTTTTTGGAATCAGCAGGATGCTCAAAGTGCCATAAATGATTTAAATGGAAAGTGGCTTGGAAGCAGACAGATTCGCTGTAACTGGGCCACAAAAGGGGCTAATGCTAACGATGACAAGCAGAGTTCAGATTCCAAAAGTGTTGTGGAGTTAACAAATGGAACATCTGAAGAGGGTCAAGAAAAGGCCAATGAAGACATCCCTGAGAAGAACCCTCAATATACCACCGTCTATGTTGGCAATCTTGCACCCGAGGTGACTTCTGTTGATCTGCACCGTCATTTTCACGCCCTTGGTGCTGGAGCTATTGAAGATGTTCGGGTGCAAAGAGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATGGGCAATGCGCGGTTTATGTTTGGCAAACCTATTAAGTGCTCATGGGGTAGTAAGCCTACTCCCCCAGGGACAGTCTCTACCCCTCTTCCCCCACCTGCTGCAGCACACGTGCCAGGCTTTTCCGCCACTGATTTTGCAGCGTACGAACGGCAAATGGCTTTGAGCAAAATGGGTGGAGCTCAGGCCCTTATGCATCAGCAGGGTCAGCAAGCCCTGAAGCAGGCAGCCATGGGAATGGGTGCTCCAGGCGCTAGTTATGATACAGGATTTCCGAGTGTTGCGACTACGCAGCACCTTATGTACTATCGGTAA 1236 0.4765 MQQQRLKQHPMMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQEVFSSTGPLEGCKLIRKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGLPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFWNQQDAQSAINDLNGKWLGSRQIRCNWATKGANANDDKQSSDSKSVVELTNGTSEEGQEKANEDIPEKNPQYTTVYVGNLAPEVTSVDLHRHFHALGAGAIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARFMFGKPIKCSWGSKPTPPGTVSTPLPPPAAAHVPGFSATDFAAYERQMALSKMGGAQALMHQQGQQALKQAAMGMGAPGASYDTGFPSVATTQHLMYYR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1982 411 FunFam Oligouridylate-binding protein 1C 229 330 - -
Glsi02g1982 411 MobiDBLite consensus disorder prediction 211 235 - -
Glsi02g1982 411 SUPERFAMILY RNA-binding domain, RBD 124 212 IPR035979 GO:0003676
Glsi02g1982 411 SUPERFAMILY RNA-binding domain, RBD 243 330 IPR035979 GO:0003676
Glsi02g1982 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Glsi02g1982 411 CDD RRM1_PUB1 48 118 - -
Glsi02g1982 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Glsi02g1982 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Glsi02g1982 411 CDD RRM2_PUB1 130 209 - -
Glsi02g1982 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Glsi02g1982 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Glsi02g1982 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Glsi02g1982 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Glsi02g1982 411 SMART rrm2_1 132 205 IPR003954 GO:0003676
Glsi02g1982 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Glsi02g1982 411 SMART rrm1_1 253 322 IPR000504 GO:0003723
Glsi02g1982 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Glsi02g1982 411 Gene3D - 229 330 IPR012677 -
Glsi02g1982 411 Gene3D - 39 125 IPR012677 -
Glsi02g1982 411 Gene3D - 126 224 IPR012677 -
Glsi02g1982 411 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Glsi02g1982 411 MobiDBLite consensus disorder prediction 211 247 - -
Glsi02g1982 411 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1982 Glsi-ChrGlsi02 69449896 69454603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1982 47 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 6.57e-20 90.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1982 02 69449896 69454603 Glsi02g1982 02 69449896 69454603 ECH