Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1905 ATGGAGAGAAACAGTTTGAGCACCAGCTTGAAAGACCATATCCATAGTAGCCCAACAAAAGAGTCCAGCTTCAGCAACAAGAACCAAATGATGAAAGAATCTTGGAACTGTAGCTCTCAGAGCAATATTGGAGGAGATGACTACATGAATGGATTCTCATGGCCTCCAAGATCATACACTTGTAGCTTCTGCAAAAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAATGTCCATAGGAGGGATAGAGCCAGGCTCAGGCAGTCATCTCCAACTGATGGTCAGTGTCACATGCTCAACCTTAACCTTAACCCTACTTCTAACCCTAACTTTTCAACCTCAAAAATGTCCTTATCATCGTCGTCACCGTCTTCTACAATGCTGAAACCATTCACTAGCACCTTACCCCCGTTGGTTTCTCCTACTGCTCTTTCTTCTTCATCTTCTCCACCATCTGCATCTCCTTCTGGATTGAAAAAATGGGTTGCGGATGGTATTTTATTGAACCCTTTAAGTACAAAGGGCTCAGTCTCAGAGTCCACAAAATTGAAGAATGCTGAATCTTTATCTGGGTTTGGAGAATATGATGCTTTTGTGCAAGATGGATGCAAAGTGTTGAAGAAGGCTGAGATCATTAGGTTGGACTTGGAGATAGGTTTGCTTAGCGATTCGAAGGATGATTTAGATCTGGAGCTTCGATTGGTGGGGTCTTGGGGTGATGGCTTTTTCCCAAAATCTGATGGCTTGCATGTTCCCGACAATGTCTGGGTGTCAAATGGGTATGATGGCATTTCCCTAAACGGAAGAGATGTATTGGTCAGTTCAAAGCATTACAGAGAACTGAGAGACCCCAAACTATTTCCCAAATTGGCACTCCATCAGAACTCAAGGACACTAGCATCCTTACAAACACTCCTCACCTGA 930 0.4387 MERNSLSTSLKDHIHSSPTKESSFSNKNQMMKESWNCSSQSNIGGDDYMNGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSSPTDGQCHMLNLNLNPTSNPNFSTSKMSLSSSSPSSTMLKPFTSTLPPLVSPTALSSSSSPPSASPSGLKKWVADGILLNPLSTKGSVSESTKLKNAESLSGFGEYDAFVQDGCKVLKKAEIIRLDLEIGLLSDSKDDLDLELRLVGSWGDGFFPKSDGLHVPDNVWVSNGYDGISLNGRDVLVSSKHYRELRDPKLFPKLALHQNSRTLASLQTLLT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1905 309 SMART c2h2final6 59 81 IPR013087 -
Glsi02g1905 309 Pfam C2H2-type zinc finger 59 83 - -
Glsi02g1905 309 Gene3D Classic Zinc Finger 55 102 - -
Glsi02g1905 309 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Glsi02g1905 309 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g1905 309 PANTHER OS07G0101800 PROTEIN 32 238 - -
Glsi02g1905 309 MobiDBLite consensus disorder prediction 1 18 - -
Glsi02g1905 309 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Glsi02g1905 309 MobiDBLite consensus disorder prediction 109 131 - -
Glsi02g1905 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1905 Glsi-ChrGlsi02 67591404 67594146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1905 35 236 C2H2 Transcription Factor Family AT3G23130 43.627 3.44e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g1905 zf-C2H2_6 6.4e-07 CL0361