Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1898 ATGTTTTCTAGGCACATACTTGTTCTTCCACCAATTGATGTTCAAGTAATCGAGTGTGAGCAGTCAGAAGCTGAACATGACTTCTATAATGCCCTCTTCAAGAGATCTAAAGAAGGTTCAATTCGATCAGTATGTTGCACAAGGCAAGATTGGCCTCAAATACGCAGTCGAAGTGATTCACAGCAGTATCCAGATTTGAACAAACTTGCAAGAAGATTCGTGAAGTCCAATTTTGATTCCGCTTCTTCGAAGAAGACAATACCATCTCCCGCATACATTGAAGAGGTTGGGGGGGGGGGGGGAGTCCAGAGAGGTGAAAACATAGAATGCCCAATATGCATGGAGTCTGCTGATGATCCTGTTTTTACGCCATGTGCACATGGGATGTGCAGGGAATGCCTACTTTCCAGCTGGAAGACCCCAGTGGGAGGTCCATGCCCACTCTGTCGACAATTGCTAAAGAATACTGATCCCATTACCTGTCCATCAGAAAATCGGTTCAGGGTTGATGTTGAGAAGAACTGGAAGGAGTCTTCGAAGGTTTCAAAGCTTTTGGAATGCTTGAAAGTCATTCAGAAGTCAGGCTCTGGTGAAAAAAATATTGTCTTCAGCCAATGGACTTCATTTTTGGATCTGTTGGAGATTCCATTGAGGAGGAAAGGAATTGGCTATTTAAGATTTGATGGGAAATTGGCTCAAAAGCAGAGGGAGAGAGTTCTGAAGGAATTTAACGAGACAAGAGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGCGTGGGCTTGAACTTAACTGCAGCCTCAAATGTATTTTTAATGGATCCATGGTGGAATCCTGCAGTCGAGGAGCAAGCAATAATGAGAACCCATCGTATAGGACAAAAGCAGACTGTTATCGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGAACCCATTATACAAGTGCAGGCCAAGAAGCAGAGGATGATATCCGCAGCCCTTACTGATGAAAAGACTCTCTCACTTTCCCCCTTCAACCTTTTCTCCCCTCTCTCAATTTGTCTCTCGCCTGAGCCAGATTCGCCGTTACCGGAGGACCCATCGGGTTTTCTGCTTCTTCTAATAATCCCAGAACCGTCGATGGCTGATTCGCAGAGAAAAAAGCAAGGTGCCGGAAGCCTGAAGCAGCAGCCGAGCCGGTTGCAAAGGCGAGCTCCGTCTTCGTTACAGGTAAACCGGTCCAGCGATTGGAACGTAGCGATTCCCTTATTGTCGCCGCTCACGACGTCGCCGAAATCGGTTGATCTGAGTCCGGCGATGGAGAGGCAAGAAGCGCGACAACTGGATCAGAGCAAGCAGTCCCAGCAGCCGTGCCACCAAATCACCAAGCCGGAGAAGGTGGTGTTCGAGACGTGGAAGCACCCGGCGGCTCCGTTCTGCTACGAACCGGCTTCGCTGGTGCCTCCTTTTTCTCCCTATGTATAG 1470 0.4769 MFSRHILVLPPIDVQVIECEQSEAEHDFYNALFKRSKEGSIRSVCCTRQDWPQIRSRSDSQQYPDLNKLARRFVKSNFDSASSKKTIPSPAYIEEVGGGGGVQRGENIECPICMESADDPVFTPCAHGMCRECLLSSWKTPVGGPCPLCRQLLKNTDPITCPSENRFRVDVEKNWKESSKVSKLLECLKVIQKSGSGEKNIVFSQWTSFLDLLEIPLRRKGIGYLRFDGKLAQKQRERVLKEFNETREKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRTHRIGQKQTVIVRRFIVKDTVEEPIIQVQAKKQRMISAALTDEKTLSLSPFNLFSPLSICLSPEPDSPLPEDPSGFLLLLIIPEPSMADSQRKKQGAGSLKQQPSRLQRRAPSSLQVNRSSDWNVAIPLLSPLTTSPKSVDLSPAMERQEARQLDQSKQSQQPCHQITKPEKVVFETWKHPAAPFCYEPASLVPPFSPYV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1898 489 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Glsi02g1898 489 SUPERFAMILY RING/U-box 105 156 - -
Glsi02g1898 489 MobiDBLite consensus disorder prediction 381 403 - -
Glsi02g1898 489 SMART helicmild6 211 294 IPR001650 -
Glsi02g1898 489 CDD SF2_C_SNF 178 305 - -
Glsi02g1898 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 333 IPR027417 -
Glsi02g1898 489 SMART ring_2 110 149 IPR001841 -
Glsi02g1898 489 MobiDBLite consensus disorder prediction 426 455 - -
Glsi02g1898 489 ProSiteProfiles Zinc finger RING-type profile. 110 150 IPR001841 -
Glsi02g1898 489 Pfam Helicase conserved C-terminal domain 183 294 IPR001650 -
Glsi02g1898 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 159 IPR013083 -
Glsi02g1898 489 Pfam Zinc finger, C3HC4 type (RING finger) 110 149 IPR018957 GO:0046872
Glsi02g1898 489 Gene3D - 10 341 IPR027417 -
Glsi02g1898 489 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 5 330 - -
Glsi02g1898 489 MobiDBLite consensus disorder prediction 379 403 - -
Glsi02g1898 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 183 343 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1898 Glsi-ChrGlsi02 67400880 67406840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1898 6 336 RAD5 or RAD16-like Gene Family AT5G43530 66.761 6.33e-151 461