Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1897 ATGGAGCCGGAGCCCGTTGGAGAAGACGATATGATACAGAAGGTTCGGTCACAAATGGGGTTCCAAGTGCCAGAACCAGTTATTATCCGAGCTCTTTCAGAATCTGGGTTCGACCCAGATGGTGCTGTCAAGTTCCTCAATGATAATCCTGGGTACATGGCCCGACCATTGACGGTGCGCTGGATGTTTGATTGGGAAGAGAAGCTGGTGGCACGTTACGTGCATATACTTAATCTTGAAGGGTTCGAGAAAATCTTCGCATGGCAGCACCACCACCACCGAGAGCCTTGGAAACTGGATTCTGAGCAATTGGTAGATAAGGTCCCTGTGAAGAAAGAAGCTGTTAACGCTGACTGCATTGAAATAGAGATGCCCAATCTGTCAAGAATGCATAATCAGAAAATTTCCCATGTGTTGAAGGAAAGCAACTTGGTAAGCTTTCATGGAGTGGAGGATGGAGGCTTTCAGGAAGACCCAGAGTGGTTTTTGGTGGGAGGGTCAGTTGTAATTGCCCTTTCAACAACCAAAGGCCGAAAATTGCTGGAAAATGAGATAGTTAATTTCGATTTCCCTCCGCCAGGTTCAAGATCCAACTCACAATGGATTGTTTGCATCTCTGGAGAGGTTGGACGGCTTCCAATGCAATGGGCCAAACGTGTCATTCCACTTGTGCATTCTCCAAAGGTTAAAGCTCAAGGACGATGCATAGCTGCACCCTTAATTTTACAAATGATGCAAGAAATCATGTTGTATGTAAGCTTTTACATTCACTACTCCATATTTACAGAGTGTGATGGGAAGTCTTCTTCGAGGCTAGATGCTTGTACTAACATTGACTCTACTGTTTATCCTCTCCCTACATTGTTCAAATTACTACAAATTAAACCATATCAAGAGGCTGAATTTACCCCCGAGGATCTTGATTCCCGGAAGCGTATGCTTAATTTGGAGGCTGATTCAGATGAAGGTGCATCTGTGTTGCCTATGATGAAACGGAGAAAGGGTTGTCAACAGTATCCAGAGGAAAACAAGGATGAAGAAGCTGTTTCAGAGTCATCTTTAAATAAGCTTGTCAGAGCTGCCGAAGTCTATCACTTGGAGGAGATGGAGCCCCCACGCACACTGATGTGTGATTTAAGGCCTTACCAGAAACAAGCTCTCCATTGGATGTCTGAATTAGAGAAGGGAATTGATGTTGAGAACGCTGCAACTCTTCATCCTTGTTGGGCAGCCTATCGTATATGCGATAGGGGAAGCAACAGCAAAGTTTTCGACTGCAACACAAATGGCAAGAGGAGGAACGGCAAGGGAAGCTCGGAAGAGAAAGATGTTGAGATTTTAAATAATACCAGTATTACAAAGAGGAAGAAAGATTCTCATATCAGCACCTCCTTTAAAGTAAAGGGTGGCACTCTTATTATCTGTCCCATGGCGTTGCTAGGTCAGTGGAAGGCTGAGCTTGAAATCCATTCAGAGCCAGAAAGTATATCCATTTTCGTTCACTACGGTGGGGATAGAACTAATGACCCTGAGGTGATCTCAGCGTATGATGTTGTCTTAACAACATATGGTCTCCTAAAAGCTGCATATGAAAGTGATGGAGAGAATAGCATATACCATAGGGTTAATTGGTATAGGGTGGTGCTAGATGAAGCTCATACCATCAAAGCCTCTGGAACCCAGGCTGCCCAGTCTGCTTTTACTTTGTCCTCACATTGCCGCTGGTGTTTAACTGGAATCCTCTTCAGTTCTTTAAGAAATGAACTCACCTTGGGACACCTGTTTGTGAAAGATCTATCGCAAAATAGTTTGGAAGACCTATTCAGCCTCCTTTGCTTCTTGCATGTTGAACAATGGTGCAACTGGGCATGGTATGTAACATCTTAA 1887 0.4414 MEPEPVGEDDMIQKVRSQMGFQVPEPVIIRALSESGFDPDGAVKFLNDNPGYMARPLTVRWMFDWEEKLVARYVHILNLEGFEKIFAWQHHHHREPWKLDSEQLVDKVPVKKEAVNADCIEIEMPNLSRMHNQKISHVLKESNLVSFHGVEDGGFQEDPEWFLVGGSVVIALSTTKGRKLLENEIVNFDFPPPGSRSNSQWIVCISGEVGRLPMQWAKRVIPLVHSPKVKAQGRCIAAPLILQMMQEIMLYVSFYIHYSIFTECDGKSSSRLDACTNIDSTVYPLPTLFKLLQIKPYQEAEFTPEDLDSRKRMLNLEADSDEGASVLPMMKRRKGCQQYPEENKDEEAVSESSLNKLVRAAEVYHLEEMEPPRTLMCDLRPYQKQALHWMSELEKGIDVENAATLHPCWAAYRICDRGSNSKVFDCNTNGKRRNGKGSSEEKDVEILNNTSITKRKKDSHISTSFKVKGGTLIICPMALLGQWKAELEIHSEPESISIFVHYGGDRTNDPEVISAYDVVLTTYGLLKAAYESDGENSIYHRVNWYRVVLDEAHTIKASGTQAAQSAFTLSSHCRWCLTGILFSSLRNELTLGHLFVKDLSQNSLEDLFSLLCFLHVEQWCNWAWYVTS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1897 628 CDD DEXDc_SHPRH-like 379 627 - -
Glsi02g1897 628 Pfam SNF2-related domain 382 622 IPR000330 GO:0005524|GO:0140658
Glsi02g1897 628 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 468 599 IPR014001 -
Glsi02g1897 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 625 IPR027417 -
Glsi02g1897 628 Gene3D - 446 627 IPR038718 -
Glsi02g1897 628 SMART ultradead3 375 602 IPR014001 -
Glsi02g1897 628 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 197 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1897 Glsi-ChrGlsi02 67378694 67382735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1897 95 625 RAD5 or RAD16-like Gene Family AT5G43530 50.598 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi02g1897 SNF2_N 1.5e-29 CL0023