Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1879 ATGGATTCGTTAGAAGGTGGTAGCTGTTGGGATTTTCTCGATTACAACTTGATCGATGATACTCCACCGGCGCCCACCGATTTCCTTTGGTCCAAACAGAGTGTGAGCTCGGAAATTGACTTTTCAGGCGGTGCTGTTGCTGTTCCAGAGAACACCCGGAAGAGAGGACGTGCCAATTCATCCTGCAAGCCAGGACCAAAGGCTTGTCGTGAGAGATTGCGGAGGGAGAAACTGAATGACAGATTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAGACTGATAAACCAGCTATACTTGATGATGCCATCAGAATCTTGAGTCAACTTAAAACTGAAGCTCAGGAACTCAAAGAAACAAATGAAAAGCTTTTAGAGGAAATCAAATGTTTGAAGGCAGAGAAAAATGAACTTCGTGAAGAGAAACTTGTTTTGAAAGCAGAGAAAGAAAGGATTGAGACGCAATTCAAAGCTTTACCAATTTCACCTGCTGGGTTTATGCCTCCCCATGCAGCTGCATATCAAGCAGGGGTCAACAAAATGGCTGTTTTTCCAAGCTATGGTTATATCCCAATGTGGCAATATCTGCCTCCATCTGCCAGGGATACATCGCAGGATCATGAGCTCAGGCCTCCTGCTGCATAG 654 0.4526 MDSLEGGSCWDFLDYNLIDDTPPAPTDFLWSKQSVSSEIDFSGGAVAVPENTRKRGRANSSCKPGPKACRERLRREKLNDRFCDLSSVLEPGRPVKTDKPAILDDAIRILSQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKAEKERIETQFKALPISPAGFMPPHAAAYQAGVNKMAVFPSYGYIPMWQYLPPSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1879 217 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Glsi02g1879 217 CDD bHLH_AtILR3_like 67 142 - -
Glsi02g1879 217 FunFam Transcription factor bHLH104 65 146 - -
Glsi02g1879 217 Gene3D - 67 146 IPR036638 GO:0046983
Glsi02g1879 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Glsi02g1879 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 136 IPR036638 GO:0046983
Glsi02g1879 217 Coils Coil 103 158 - -
Glsi02g1879 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Glsi02g1879 217 SMART finulus 68 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1879 Glsi-ChrGlsi02 66986757 66991262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1879 42 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 66.120 2.86e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g1879 HLH 9.1e-08 No_clan