Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1876 ATGGCTGTACGCGGTGGGAACTTGGAACCGCGAATAGATTCGTTAGAAGGTGGTAGCTGTTGGGATTTTCTCGATTACAACTTGATCGATGATACTCCACCGGCGCCCACCGATTTCCTTTGGTCCAAACAGAGTGTGAGCTCGGAAATTGACTTTTCAGGCGGTGCTGTTGCTGTTCCAGAGAACACCCGGAAGAGAGGACGTGCCAATTCATCCTGCAAGCCAGGACCAAAGGCTTGTCGTGAGAGATTGCGGAGGGAGAAACTGAATGACAGATTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAGACCGATAAACCAGCTATACTTGATGATGCCATCAGAATCTTGAGTCAACTTAAAACTGAAGCTCAGGAATTCAAAGAAACAAATGAAAAGCTTTTAGAGGAAATCAAATGTTTGAAGGCAGAGAAAAATGAACTTCGTGAAGAGAAACTTGTTTTGAAAGCAGAGAAAGAAAGGATTGAGACGCAATTCAAAGCTTTACCAATTTCACCTGCTGGGTTTATGCCTCCCCATGCAGCTGCATATCAAGCAGGGGTCAACAAAATGGCTGTTTTTCCAAGCTATGGTTATATCCCAATGTGGCAATATCTGCCTCCATCTGCCAGGGATACATCGCAGGATCATGAGCTCAGGCCTCCTGCTGCATAG 687 0.4585 MAVRGGNLEPRIDSLEGGSCWDFLDYNLIDDTPPAPTDFLWSKQSVSSEIDFSGGAVAVPENTRKRGRANSSCKPGPKACRERLRREKLNDRFCDLSSVLEPGRPVKTDKPAILDDAIRILSQLKTEAQEFKETNEKLLEEIKCLKAEKNELREEKLVLKAEKERIETQFKALPISPAGFMPPHAAAYQAGVNKMAVFPSYGYIPMWQYLPPSARDTSQDHELRPPAA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1876 228 Gene3D - 77 157 IPR036638 GO:0046983
Glsi02g1876 228 Coils Coil 114 169 - -
Glsi02g1876 228 CDD bHLH_AtILR3_like 78 153 - -
Glsi02g1876 228 SMART finulus 79 130 IPR011598 GO:0046983
Glsi02g1876 228 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Glsi02g1876 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 147 IPR036638 GO:0046983
Glsi02g1876 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Glsi02g1876 228 PANTHER BHLH TRANSCRIPTION FACTOR 18 228 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Glsi02g1876 228 FunFam Transcription factor bHLH104 76 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1876 Glsi-ChrGlsi02 66966352 66972344 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1876 53 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 65.574 2.18e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g1876 HLH 9.9e-08 No_clan