Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1873 ATGGTTTGTATGGCTTTGGCGGTGGTGGAAGAAGAAGCAGTGGTTGCACTTCAAACAGGTGAGCTAGTTGTCTTTGTTAAAGCTGTCGCTGAGGAATTGGGAATTGTTTTCCAGCCAAATGACAATGGCCTTCAGTGGTTCGATTACTTTTCTGACATGAGTGTTTTGGCTCAGGGAAGATACGAGATTATGAGGAATTACATGCCCAAAGGGGCTTTGACAGCTTTGGCATCAGTTGCTGATTCATCACAGAAGCCAGAGCTAGAAATTTGTGTGAGCATATTGGATGCATTGAATGAATGCATACAGAGCCTCATAAGTGGGTCTGCTGAATTGATGGAGCAGGCAGCATTGGGACTTGGTGAACTGATAGAGGTGACCAGTGTGAAGATTCCTCCATATGCCTTAGCTCAAGCTATTTCAAAAAGGGATAGGCGGGGCAAAGGGGAAAAAGGTGCCCCATGGATAACATCTTCAGAGAGTCAACAATTTCCGTCAATGGTTAGGCCTTTGATTAAGGATTCAATGGTGCCGTGGTGGGCTGCATGTGCCACAGTGCCATTCTGCTCTTCATGTCTTCTGCTTCTGATAAAGATCAAAGAAACCCCATTTCTCTGCATTTTCTGTGACATTCTCGGTATGGATCTTGCAAGCAGAAGATACCTGATTCATGGGTCACAATCTCTTTCGCCAATTTCAAGTCCAGGGAGTTCAATCATTCACCCTCATTTGCATCCTGCTAGTACTAGTTTTCCCATAATAGCAATTGCCATAATAGGAATATTAGCCACAGCTTTCTTGCTTGTTAGCTACTACATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGTATAGATCTTGTAAGACGGTTTTCGCCTTCCCGGCGGTACGACGAGCCACCAGTAATATACTCGCCGGGAACGGAGCCACAAGGACTCGACGAGGCAGTGATTCGATTAATCCCAGTAATCCAATACAAAGCAGAGGAAAACAGAGATTCTGGAGGAAGAAGCTTCTCTGAATGTGCTGTTTGCTTGAACGAGTTTCACCAGAATGAGAAGCTGAGGATCATACCAAATTGCAGCCATGTCTTCCACATAGATTGCATCGATGTTTGGCTTCAAAACAATGCCAATTGCCCACTTTGCAGAACCAGCATTTCCTTCACAAGCCGATTCCAAATCGACCAGATCCTCACTTCAAGGCCCTTTTCTCAAGATCGAATTCGAACCCCGTATGGTGAAAATCTCATTGGCGGGGATGAAGATTTTGTTGTGATTGAACTGGGCGATGATCATAGTAGAGACCAGAACTTAAATAGAGCCCAAGAAAGAGGGAATCCATTGGAGTTACCTACACATCCTATAAGTCCTTCACCCAGGAAGTTAATGCATAAGAAAGCATGGAAGTTGCAGAAAGTGACGAGTATGGGAGATGAGTGTATTGATATTAGAGCTAAAGATGATCAGTTTTCAGTTCAACCCATTAGAAGATCTTTCTCCATGGATTCATCAAGGGACAGACAGTTCTATCTGGCAGTTCAAGAGGCTTTGCAGAAACAGAACAGGCAAGCGAATGAGGTCAGCTCCATTGAAGGGAGCAGTGGTAATGGTAGAGCTAAGAGATCATTCTTTTCCTTTGGACATGGTAGTAGATCCAGAAGTTCAGTACTACCTGTTTACTTGGACCACTAA 1695 0.4431 MVCMALAVVEEEAVVALQTGELVVFVKAVAEELGIVFQPNDNGLQWFDYFSDMSVLAQGRYEIMRNYMPKGALTALASVADSSQKPELEICVSILDALNECIQSLISGSAELMEQAALGLGELIEVTSVKIPPYALAQAISKRDRRGKGEKGAPWITSSESQQFPSMVRPLIKDSMVPWWAACATVPFCSSCLLLLIKIKETPFLCIFCDILGMDLASRRYLIHGSQSLSPISSPGSSIIHPHLHPASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLVRRFSPSRRYDEPPVIYSPGTEPQGLDEAVIRLIPVIQYKAEENRDSGGRSFSECAVCLNEFHQNEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISFTSRFQIDQILTSRPFSQDRIRTPYGENLIGGDEDFVVIELGDDHSRDQNLNRAQERGNPLELPTHPISPSPRKLMHKKAWKLQKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSRDRQFYLAVQEALQKQNRQANEVSSIEGSSGNGRAKRSFFSFGHGSRSRSSVLPVYLDH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1873 564 SMART ring_2 342 383 IPR001841 -
Glsi02g1873 564 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Glsi02g1873 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 389 IPR013083 -
Glsi02g1873 564 PANTHER RING-H2 FINGER PROTEIN ATL16 238 560 IPR044600 GO:0016567|GO:0016740
Glsi02g1873 564 Pfam Ring finger domain 341 384 IPR001841 -
Glsi02g1873 564 FunFam E3 ubiquitin-protein ligase ATL6 304 389 - -
Glsi02g1873 564 CDD RING-H2_EL5-like 341 384 - -
Glsi02g1873 564 SUPERFAMILY RING/U-box 341 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1873 Glsi-ChrGlsi02 66941438 66951042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1873 240 563 C3H Transcription Factor Family AT1G04360 51.966 9.85e-100 305