Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1872 ATGCAGCATGCAAACAAAAGACAAGAGGAAGCTGATCGAGCCATGGATGAAGAAGGATCAAGAACGGGGAAGGGCAGGGACGACGTGGGAGGAGATGTCCGGTACCGGGGTGTTAGGCGCCGGCCGTGGGGGAAGTTTGCAGCTGAGATTCGCGATTCGACCCGGCAGGGTCAACGAGTGTGGCTGGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGACCGAGCTGCTTATGCCATGAGAGGCCCATTTGCCATCCTCAATTTTCCAGATGAATACCCACTTTCAGCTGGTGGTGCTACTTCTACTTCTACTTCTACTTCTATTGCTACCTCTCATTCCTCTGCTGCTTCTTCTTCTTCTTCTTCTTCCAGGCACAGTGAACATGGAAAACAAGTTTTTGAATTCGAGTACTTGGATGACAAATTGTTGGAGGAGCTTCTTGATTGTGAGGAGAAAAAGAAAAATGGAAAGTGA 483 0.4969 MQHANKRQEEADRAMDEEGSRTGKGRDDVGGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPDEYPLSAGGATSTSTSTSIATSHSSAASSSSSSSRHSEHGKQVFEFEYLDDKLLEELLDCEEKKKNGK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1872 160 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Glsi02g1872 160 PANTHER DNA-BINDING DOMAIN 14 156 IPR044808 GO:0003700|GO:0009873
Glsi02g1872 160 SMART rav1_2 34 98 IPR001471 GO:0003700|GO:0006355
Glsi02g1872 160 MobiDBLite consensus disorder prediction 1 33 - -
Glsi02g1872 160 SUPERFAMILY DNA-binding domain 34 94 IPR016177 GO:0003677
Glsi02g1872 160 MobiDBLite consensus disorder prediction 99 129 - -
Glsi02g1872 160 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Glsi02g1872 160 MobiDBLite consensus disorder prediction 97 132 - -
Glsi02g1872 160 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Glsi02g1872 160 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Glsi02g1872 160 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Glsi02g1872 160 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Glsi02g1872 160 ProSiteProfiles AP2/ERF domain profile. 34 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1872 Glsi-ChrGlsi02 66912290 66912772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1872 34 157 AP2-EREBP Transcription Factor Family AT3G23230 61.290 2.18e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g1872 AP2 2.3e-16 CL0081