Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1869 ATGGATTCTTCTTCCTCCTCCTTCATCTACTCTTCCACATCCGATTTCTCGTCCGAATCTCCCTTCGGGTCGCCGGAATCAATATTGTCTTGGAATTTCGAGAACAATTACCTTCCCTTCAACGAGAACGACCCGGAGGAGATGCTTCTCTACGGTCTGATTTCAAAGGCAAACAATGACCAAGAAGAAGAACCATTGGACACACCATGCGGGAACAGATTAGTGAAGGAGGAAGAATTGAGCTCCGACGAAAAAGGTAGCAGCGGCGGCGGCGGCGGCGTCCTGAGGAAGGAAAAGAACTACAGAGGCGTCCGTAGACGACCGTGGGGTAAGTTCGCGGCGGAGATAAGGGATTCGACGAGGCATGGGATGAGGGTGTGGTTGGGGACATTTGATAGTGCAGAAGCAGCCGCTTTGGCTTATGATCAAGCTGCGTTTTCCATGAGAGGCTCTGCGGCTATACTGAACTTCCCAGTGGAGACGGTGAGGGAATCACTGAAAGAGATGGAATACGATAGGTCGGAAGATGATGGATGTTCACCTGTGGTGGCTTTGAAGAGAAAACACTCCATGAGAAGAAAAGTCAGCAACAAGAAGATCAAAGACAGAGAAGTAACGATGATAGACAATGTGGTCGTGTTCGAAGATCTAGGCCCAGATTACTTGGAACAACTATTGATGTCCTCTGAGAATCCTGTATGTTAA 705 0.4865 MDSSSSSFIYSSTSDFSSESPFGSPESILSWNFENNYLPFNENDPEEMLLYGLISKANNDQEEEPLDTPCGNRLVKEEELSSDEKGSSGGGGGVLRKEKNYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVETVRESLKEMEYDRSEDDGCSPVVALKRKHSMRRKVSNKKIKDREVTMIDNVVVFEDLGPDYLEQLLMSSENPVC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1869 234 MobiDBLite consensus disorder prediction 60 84 - -
Glsi02g1869 234 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 CDD AP2 99 159 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 PANTHER DNA-BINDING DOMAIN 65 227 IPR044808 GO:0003700|GO:0009873
Glsi02g1869 234 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 Gene3D AP2/ERF domain 99 160 IPR036955 GO:0003700|GO:0006355
Glsi02g1869 234 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Glsi02g1869 234 MobiDBLite consensus disorder prediction 60 97 - -
Glsi02g1869 234 SUPERFAMILY DNA-binding domain 100 160 IPR016177 GO:0003677
Glsi02g1869 234 FunFam Ethylene-responsive transcription factor 2 99 160 - -
Glsi02g1869 234 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1869 Glsi-ChrGlsi02 66824296 66825000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1869 38 231 AP2-EREBP Transcription Factor Family AT3G23240 61.111 3.05e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g1869 AP2 8.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1869 02 66824296 66825000 Glsi11g0734 11 4631931 4632569 CCT
Glsi02g1869 02 66824296 66825000 Glsi02g1869 02 66824296 66825000 ECH