Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1842 ATGACAGAAGAACTCAAACGAAACTACGTCGTATCATCGGAGATCGGCCGGGGACGATTCGGCACCGTTTTCAGGTGTGCTTCTGTGGACTCCGGCGACGATTCCTTCGTTGTCAAATCCATCGATAAAAGGGTCATAGCCGCCGGCGACTCCCTCGATGCCCAATGCGTCTTCGCTGAGCCCAAGATCATTCAGCTACTCACCCCTCACCCCCACATCTTGAACATCCACAACGTCTACGAGGACGAAACCCACCTCCACATGGTCCTCGACTTCTGCGACGATTTGGATCTCCATTTTCGAATCAGACCCGAGCCAGAGACTGTCAGCGTCATACCCGAACCGGACGCTGCCATCATCATGTGGCAGCTAATGCAAGCAGTTTCTCACTGCCACCGCCACGGCGTGGCTCACCGTGATATCAAGCCTGGTAATATACTCTTCCACGGGGATAACCTGCTCAAGTTAGCCGACTTCGGGTCGGCTGGGTTTTTCAAGGAGGGCGAGCCGATGAGCGGTGTGGTGGGAACCCCTTATTACGTGGCGCCGGAGGTTCTGATCGGCAGGGAGTACAATGAGAAAGTCGACGTGTGGAGTGCCGGTGTCGTTTTGTACATAATATTGTCAGGGTATCCACCGTTTTATGGCGATACCACGCAGGAGATTTTTGAAGCAGTCCTTAGAGCCAACTTGAGGTTCCCCAGTCGGGATTTTCACTCGGTGTCACCGGCGGCTAAGGATCTGCTACGAAGAATGCTCTGTAAAGACGTTTCTAGAAGGTTATCGGCCGAGGAAGTGCTGAGTAAGCATTCACTTCCTTTTTAA 825 0.5297 MTEELKRNYVVSSEIGRGRFGTVFRCASVDSGDDSFVVKSIDKRVIAAGDSLDAQCVFAEPKIIQLLTPHPHILNIHNVYEDETHLHMVLDFCDDLDLHFRIRPEPETVSVIPEPDAAIIMWQLMQAVSHCHRHGVAHRDIKPGNILFHGDNLLKLADFGSAGFFKEGEPMSGVVGTPYYVAPEVLIGREYNEKVDVWSAGVVLYIILSGYPPFYGDTTQEIFEAVLRANLRFPSRDFHSVSPAAKDLLRRMLCKDVSRRLSAEEVLSKHSLPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1842 274 CDD STKc_CAMK 8 268 - -
Glsi02g1842 274 SMART serkin_6 9 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1842 274 Gene3D Transferase(Phosphotransferase) domain 1 106 273 - -
Glsi02g1842 274 ProSiteProfiles Protein kinase domain profile. 9 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1842 274 Pfam Protein kinase domain 9 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1842 274 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Glsi02g1842 274 FunFam Maternal embryonic leucine zipper kinase 1 272 - -
Glsi02g1842 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Glsi02g1842 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 270 - -
Glsi02g1842 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Glsi02g1842 274 SUPERFAMILY Protein kinase-like (PK-like) 5 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1842 Glsi-ChrGlsi02 65426814 65427638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1842 4 267 EF-hand Containing Proteins AT3G57530 40.824 1.38e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi02g1842 Pkinase 1.4e-65 CL0016