Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1838 ATGGTGAGAGCTCCTTGCTGTGAGAAGATGGGATTGAAGAAGGGTCCTTGGACTCCTGAGGAAGATAAAATCTTAATATCTTACATCCAAGAACATGGCCATGGAAACTGGCGTGCCCTCCCTAAGCAAGCAGGCCTTTTGAGATGCGGGAAGAGCTGCAGATTACGCTGGATCAATTATTTAAGGCCAGATATCAAGAGAGGAAACTTCACTATAGAAGAAGAAGAAACTATCATAAAGATGCATGAGTTGCTGGGAAACAGGTGGTCCGCAATTGCAGCAAAGTTACCAGGAAGAACTGACAATGAGATAAAAAATGTGTGGCACACCCACTTAAAGAAGAGGCTGTTGAAAACAAACCAACCCGATACCAAAAGAAGCTCCAAGCCAGCAACTAAACGATCTGATTCCAATTCCAGTACAGTTACTGATCAATCAGGACCTGCTAGTATAGTCAGTTTCCCTGAAAAGGACAGTACTTCAGCATGCACTTCTTCTTCCAGTGATTTCTCGTCAGCCACAGTTGGAGAAAGCATAAACATGGATATGTCCATAAAGAGTGAAGACATAGAGTCTTTGGAAAGTGTATTGTCTGAAATCGACGAGAGCTTTTGGTCGGAAGCAGCTATGGAAGAGAGCCCCATCACCATGCCATCAAATTCTTTGACAATTTCAAATGAATCACCAGTTCAATACCCATTTAATTCTATTGAATTCTTCCAACAGGGTTGTGGCTATAGTTCAAACTTTGACGATGGCATGGATTTCTGGTATGACATATTCATCAGATCAGGGGATTCAATAGAATTGCCAGAGTTCTGA 822 0.4221 MVRAPCCEKMGLKKGPWTPEEDKILISYIQEHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNQPDTKRSSKPATKRSDSNSSTVTDQSGPASIVSFPEKDSTSACTSSSSDFSSATVGESINMDMSIKSEDIESLESVLSEIDESFWSEAAMEESPITMPSNSLTISNESPVQYPFNSIEFFQQGCGYSSNFDDGMDFWYDIFIRSGDSIELPEF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1838 273 CDD SANT 69 112 IPR001005 -
Glsi02g1838 273 Gene3D - 13 66 - -
Glsi02g1838 273 MobiDBLite consensus disorder prediction 115 132 - -
Glsi02g1838 273 Gene3D - 68 142 - -
Glsi02g1838 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g1838 273 FunFam MYB-related transcription factor 13 66 - -
Glsi02g1838 273 CDD SANT 16 61 IPR001005 -
Glsi02g1838 273 MobiDBLite consensus disorder prediction 115 172 - -
Glsi02g1838 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Glsi02g1838 273 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi02g1838 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g1838 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi02g1838 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g1838 273 SMART sant 66 114 IPR001005 -
Glsi02g1838 273 SMART sant 13 63 IPR001005 -
Glsi02g1838 273 MobiDBLite consensus disorder prediction 133 172 - -
Glsi02g1838 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi02g1838 273 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1838 Glsi-ChrGlsi02 65275377 65277005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1838 1 273 MYB Transcription Factor Family AT2G31180 50.714 7.85e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g1838 Myb_DNA-binding 4.5e-16 CL0123