Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1823 ATGGATCACGTTATTGGTGGAAAGTTCAAGCTTGGGCGGAAGATTGGGAGTGGATCCTTTGGCGAGCTTTATTTGGGTGTTAATTTACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGGGAAGACCAAGCATCCACAACTTCATTATGAATCAAAATTATATATGCTTCTTCAAGGAGGAACTGGCATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGAATACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTAGAAGATTTGTTTAACTATTGCAGTAGGAAATTCTCTCTGAAAACAGTTCTGATGCTAGCAGATCAGCTAATCAACAGAGTTGAGTACATGCACTCCCGAGGTTTTCTTCACCGTGATATAAAGCCTGATAACTTTTTAATGGGTTTAGGCCGCAAAGCAAACCAGGTATACATAATTGATTATGGCCTTGCAAAAAGGTATCGGGATCTTCAAACACATAAACACATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGCTATGCAAGTGTTAATACTCACCTTGGAGTTGAACAAAGTAGAAGAGATGATCTAGAATCACTTGGTTACGTGCTCATGTACTTCTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCGATAGAGGTTCTATGCAAGTCATATCCATCAGAGTTCACATCATACTTCCACTACTGCCGATCATTGCGATTTGAAGACAAACCTGATTATTCATACCTAAAGAGACTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCAAGTTCCAGAGCACAGCCAAGTGGGAAACCAGTTATAAAACCATCGGCGGAAAGATTAGAACGGCCCTCAGTTGGACAAGAAATTCGGGATAGATTCTCAGGTTCAGTTGAGGCATTTACCAGAAGAAATGGCTCTGGTCTGCATAGTGATCTCTCAAGGCATAGGTCTTCAGATGGTGTGCCATCTTCCAAAGTAGTGCAACCCAATTCTGAGAGAGCTCGTAATTCTTCTCGTACTGGCAGTGCCTCAAAAAGGCCTGTCATGTCAAGCAGCCGGCCAAGCTCCTCTGGTGAGCCCAGTGAAAGCCGTTCTAGTCGATTGGTCTCAAGCAGTGGTCGTCTATCTACAACTCAGAGGACTCAACCTGGTTATGAATCCAAAACATTATCTTTTACCCGTGCTGCAGCATCGAGAGGTGGTCGTGATGATACTCTAAGGAGCTTTGAGTTTCTGTCAATTGGCACAGGGAAAAGGAGATGA 1380 0.4246 MDHVIGGKFKLGRKIGSGSFGELYLGVNLQSGEEVAVKLESGKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKRYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRAQPSGKPVIKPSAERLERPSVGQEIRDRFSGSVEAFTRRNGSGLHSDLSRHRSSDGVPSSKVVQPNSERARNSSRTGSASKRPVMSSSRPSSSGEPSESRSSRLVSSSGRLSTTQRTQPGYESKTLSFTRAAASRGGRDDTLRSFEFLSIGTGKRR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1823 459 SMART serkin_6 9 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1823 459 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Glsi02g1823 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1823 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Glsi02g1823 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Glsi02g1823 459 FunFam Casein kinase 1-like protein 1 327 - -
Glsi02g1823 459 Gene3D Transferase(Phosphotransferase) domain 1 1 331 - -
Glsi02g1823 459 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1823 459 FunFam Putative Casein kinase I 1 85 - -
Glsi02g1823 459 PANTHER CASEIN KINASE-RELATED 9 403 - -
Glsi02g1823 459 MobiDBLite consensus disorder prediction 358 433 - -
Glsi02g1823 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Glsi02g1823 459 MobiDBLite consensus disorder prediction 300 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1823 Glsi-ChrGlsi02 64943469 64948782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1823 8 213 MAP Kinase Kinase Kinase AT3G06030 26.389 1.64e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi02g1823 Pkinase 1e-25 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1823 02 64943469 64948782 Glsi02g1823 02 64943469 64948782 ECH