Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1782 ATGGAAAATGATACACGCCCACTCTCTACTACTGGTGGCTGGAATTCTTTGGAGCTTGTCGCCGTTAATGTTATCGGCGGTCTCCCCCATGGGATGACATTGGTGTTTAATGGGAAAATCTGGTTGCCTCATCAGATTTTGCAACATAGATTAGTTGCTAGAGAAGAGATGGCAAATAAATTAGCGGGGCGACTCGTTGGTTCAGAGATACATGGGTTCCATACATTGCAAGAACTGGACGTTGAGAACATTTTGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCTATACTTTGCAATCACAAGTATTTCACCATCCATGTCAAGCCAGTGCATTTGCCCAAAAGTGGCACTATAGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACTGTCAAAGAAGCTCATGAGCACTTAAAAGTCGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACCCAAGCTTTGTTCGCAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTGCTTGTTCATTATCGTGAAACACAGGAGTTGCAAGGTTCTCCAGTCACGCCTGTAAATTCAAATTCTAGCTCAACCTCTGATTCAACTGCACCGTTGATTTTATTAGAGGAGTTAGATTCTGGAACCAACAATCCAACTGGTGCAGAGCTTAATGACAATTTGAAAGTCAAGAGTCATGAGTTGAGACTTCTTGAGCTTAATACGCTTGAATGGGATGATCTAGTGGTTACAAATGAGCTCAACACTTCTACCACATCTAATGAAGGCAAAGTTCTGTCTTTTAATCAACAAAATCAATCTTTATTGAATGGCAATTTCCCCAATGTCACTAGCAATCCGTCTGCAGAAGTTCCTTCTTTTCATTATGTAACTGAGCCAATAGCTGGGAGCAATAGTGCTCCTTACAGTTTTCCAGAGACTGTAAACCTTCAGGCAGCCGACAATCAAGTAAATCCAAGTGTGCAGGAGGGACATCCTATCTTTGTGGGCGGTGTTGATTCCTTGGAAAATTTGGTCAGTGATGGTTTGCAGAGTCAGGACAGCTTTGGGAGGTGGATGAGCCACATAATTTCTGATACACAGTGTTCTGTAGATGACTCAGCTCTTGAACCCTTGGTTACATCTATTCAAGGACCATATTCTTCCCCTGTAGTGGATCATCATCAACCTTCTCTGCCCGGACAAATTTTTAATCTCACTGAAGTGTCACCTGTATGGGCATCTTCCACTGAGAAAACAAAGATCCTGGTTACTGGAATCTTTCATGATAGCTATCTACACCTTGCAAAGTCCAATCTACTGTGTGTTTGTGGTGATGTAAGTGTTCAAGCTGAACTTGTTCAGTTGGGGGTCTACCGTAGTTGGGTATCACCACATTCCCCTGGATTCGTGAATCTCTATATGAGCCTTGACGGCTATAAGCCCATAAGCCAAGTTGTCAATTTCGAGTATCGCACTCCAGTGTTGCATGACCCTGTAGCCTCTATGGAAGAGAGGTACAATTGGGACGAGTTTCGATTTCAAATGAGGCTTGCTTATTTGCTCTTTTCTACACAAAAAAGCCTTGATATTTTCTCTGGTAAAATATCACCCAATGCACTGAAGGAGGCTAGGAACTTTGCCCTCAAAGCCTCGTATGTTTCCAAAAGTTGGCAAGGATTGATCAAGTCAACTGAAGACAACAAAACTCCATTTCCTCATGCAAAAAATGCACTTTTTGAAATATCATTGAAAAACAGACTAAAGGAATGGTTGTTAGAAAGAATTGTCTTAGGACATAAGACAACTGAATATGATTCCCAAGGTCAAGGTGTAATCCATCTGTGCACAATTTTGGGATATACTTGGGCTATTTCCTTATTTTCATGGTCAGGCTTGTCTCTGGATTTCCGTGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTGACTGCTGGGGCAAAGCCAAACTTGGTCACAGATCCTACTCCAGAAAATCCTGGTGGACTTACTGCTGCTGATATTGCTTATATGAAGGGTTATGATGGCTTGGCAGCTTATCTTTCTGAAAAATCTCTGGTCAAACAGTTTGAAGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAGCAAGCACAACTGATCCAGTAAATTCTGACAACCTCACTGAGGACCAGCTATACTTGAAGGAAACGTTGGCATCTTACCGGATAACTGCTGAGGCTGCAGCACGAATACAAGCTGCATTTAGGGAGCACTCACTAAAATTACAGACAAAGGCAGTTCAATTTTTTAGTCCAGAGGCGGAAGCACGCAGAATAGTTGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAAAAAGATGATGGCAGCTGCTGCTCGGATCCAGTATTCCTTCCGTACATGGAAGTTCCGTAAACAGTTTCTCAACATGCGCCGTCAAGCTATCAAAATTCAAGCTGCTTTCCGGGGCTTCCAAGTGCGGAAGCAGTATCGTAAAATTCTCTGGTCTGTTGGAGTGCTTGAGAAGGCAATCCTGCGTTGGCGATTGAAGAGAAAAGGCTTCCGTGGACTCCAGGTTAATCCTGTCGAAGAAATGGTAGATCAGAGGCAGGAAAGTGATCCAGAGGAGGACTTCTTTCGGGCTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTTCAGGCCATGTTTCGTTCCAAGAAAGCTCAAGAAGAGTATCGTAGAATGAAGCTGGCTCACAATCAAGCAAAGCTAGAACTGGAATATGAAGAGCTCCTCAATTCAGAGGTTGATATGCAATAG 2928 0.429 MENDTRPLSTTGGWNSLELVAVNVIGGLPHGMTLVFNGKIWLPHQILQHRLVAREEMANKLAGRLVGSEIHGFHTLQELDVENILEEARTRWLRPNEIHAILCNHKYFTIHVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSSSTSDSTAPLILLEELDSGTNNPTGAELNDNLKVKSHELRLLELNTLEWDDLVVTNELNTSTTSNEGKVLSFNQQNQSLLNGNFPNVTSNPSAEVPSFHYVTEPIAGSNSAPYSFPETVNLQAADNQVNPSVQEGHPIFVGGVDSLENLVSDGLQSQDSFGRWMSHIISDTQCSVDDSALEPLVTSIQGPYSSPVVDHHQPSLPGQIFNLTEVSPVWASSTEKTKILVTGIFHDSYLHLAKSNLLCVCGDVSVQAELVQLGVYRSWVSPHSPGFVNLYMSLDGYKPISQVVNFEYRTPVLHDPVASMEERYNWDEFRFQMRLAYLLFSTQKSLDIFSGKISPNALKEARNFALKASYVSKSWQGLIKSTEDNKTPFPHAKNALFEISLKNRLKEWLLERIVLGHKTTEYDSQGQGVIHLCTILGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLTAGAKPNLVTDPTPENPGGLTAADIAYMKGYDGLAAYLSEKSLVKQFEDMSLAGNISGSLEASTTDPVNSDNLTEDQLYLKETLASYRITAEAAARIQAAFREHSLKLQTKAVQFFSPEAEARRIVAAMKIQHAFRNFETKKMMAAAARIQYSFRTWKFRKQFLNMRRQAIKIQAAFRGFQVRKQYRKILWSVGVLEKAILRWRLKRKGFRGLQVNPVEEMVDQRQESDPEEDFFRAGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELEYEELLNSEVDMQ 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1782 975 Gene3D Immunoglobulins 420 515 IPR013783 -
Glsi02g1782 975 FunFam calmodulin-binding transcription activator 5 591 731 - -
Glsi02g1782 975 Pfam Ankyrin repeats (3 copies) 619 690 IPR002110 GO:0005515
Glsi02g1782 975 Gene3D - 822 872 - -
Glsi02g1782 975 ProSiteProfiles IQ motif profile. 929 957 IPR000048 GO:0005515
Glsi02g1782 975 Pfam CG-1 domain 87 200 IPR005559 GO:0003677
Glsi02g1782 975 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Glsi02g1782 975 ProSiteProfiles CG-1 DNA-binding domain profile. 81 207 IPR005559 GO:0003677
Glsi02g1782 975 ProSiteProfiles Ankyrin repeat region circular profile. 661 689 - -
Glsi02g1782 975 FunFam Calmodulin-binding transcription activator 2 824 872 - -
Glsi02g1782 975 Pfam IQ calmodulin-binding motif 850 869 IPR000048 GO:0005515
Glsi02g1782 975 ProSiteProfiles IQ motif profile. 848 872 IPR000048 GO:0005515
Glsi02g1782 975 SUPERFAMILY Ankyrin repeat 610 723 IPR036770 -
Glsi02g1782 975 Gene3D - 594 731 IPR036770 -
Glsi02g1782 975 SMART ANK_2a 661 690 IPR002110 GO:0005515
Glsi02g1782 975 ProSiteProfiles IQ motif profile. 825 854 IPR000048 GO:0005515
Glsi02g1782 975 SMART CG_1_2 84 202 IPR005559 GO:0003677
Glsi02g1782 975 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 80 957 - -
Glsi02g1782 975 SMART iq_5 927 949 IPR000048 GO:0005515
Glsi02g1782 975 SMART iq_5 847 869 IPR000048 GO:0005515
Glsi02g1782 975 SMART iq_5 824 846 IPR000048 GO:0005515
Glsi02g1782 975 SMART iq_5 771 793 IPR000048 GO:0005515
Glsi02g1782 975 SUPERFAMILY E set domains 425 512 IPR014756 -
Glsi02g1782 975 Coils Coil 941 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1782 Glsi-ChrGlsi02 64056885 64089487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1782 84 961 CAMTA Transcription Factor Family AT3G16940 56.009 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi02g1782 CG-1 1.3e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1782 02 64056885 64089487 Glsi02g1782 02 64056885 64089487 ECH