Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1754 ATGGATAGTAATAAGGATGAGGCTTTGAGGTGTATTCGCATCGCTGAGGAGGCGATTGCAACAGGGAACAAAGCACGTGCACTTAAATTTATCAAAATTGCACAACGATTGAATCACAATCTGCCAGTTGATGTATTACTCACGATGTGTGAGAGGCTTGATTCTCAGTCGCCTGCACGTCCTTTGGATGAAAACTGTAACCATCAGGTTAAGAAGGAGCATGGTTCAATGAAAAGTGATGAGGATTTGAATGGAGAGAGGAATTATACAGAAGAACATGTTCAATTGATTAGGGAGATTAAGGGGAGGAACGATTATTATGCCATTCTTGGTGTGGAGAAGAGTTGTTCTGTTGAGGAGATTAGACGAGCTTATAGGAGATTGTCATTAAAAGTTCATCCTGATAAAAATAAGGCACCAGGTTCTGAAGAGGCATTTAAGAAGGTATCCAAGGCTTTCAAGTGTTTAAGTGATGATGGTTCAAGGAGGCAGTATGATCAGACAGGGCTGGTTGAGGAGTTTGAATACAATCAGCAGCATAATGTTAGGCGCAGGAGGAGAAGGACAACCACACATGATTTTTTCGATGATGACTTTGATCCTGATGAGATATTTAGGGCATTCTTTGGACAAGCAGACGTATTTGGGAGAACTCATGTTTACAGGACACGGGGAATGGGCAGTCATCAAAGGCAGGAATTTCAAGGAGGAGGGCTTAATATTATGCTTCTTCTGCAACTTGTACCATTCTTAATAATTTTTCTGCTTGCCTACTTGCCATTTTCTGAACCAGACTACTCTTTGCATAAGAATTACTCATATCAGATTCCAAAGACAACGGAGAAGTATGGGGTAGAGTTTTTTGTGAAATCTAAAGCATTTGATGCTAACTATCCACAGGGAAGTCCTACTCGTGCAAATGTTGAGAGCAATGTGATAAAGGATTATAAAAATTTGCTTCGTCGTTACTGTCAAATAGAGCTTCAGAGGCGTAGTTGGAATAGGAATCTGCCAACTCCTAACTGTGAAAAGCTACAGAAACTTGGACTAGCTTGA 1056 0.4062 MDSNKDEALRCIRIAEEAIATGNKARALKFIKIAQRLNHNLPVDVLLTMCERLDSQSPARPLDENCNHQVKKEHGSMKSDEDLNGERNYTEEHVQLIREIKGRNDYYAILGVEKSCSVEEIRRAYRRLSLKVHPDKNKAPGSEEAFKKVSKAFKCLSDDGSRRQYDQTGLVEEFEYNQQHNVRRRRRRTTTHDFFDDDFDPDEIFRAFFGQADVFGRTHVYRTRGMGSHQRQEFQGGGLNIMLLLQLVPFLIIFLLAYLPFSEPDYSLHKNYSYQIPKTTEKYGVEFFVKSKAFDANYPQGSPTRANVESNVIKDYKNLLRRYCQIELQRRSWNRNLPTPNCEKLQKLGLA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1754 351 SMART dnaj_3 104 161 IPR001623 -
Glsi02g1754 351 Pfam Domain of unknown function (DUF1977) 262 332 IPR015399 -
Glsi02g1754 351 CDD DnaJ 105 158 IPR001623 -
Glsi02g1754 351 Pfam DnaJ domain 105 166 IPR001623 -
Glsi02g1754 351 ProSiteProfiles dnaJ domain profile. 105 169 IPR001623 -
Glsi02g1754 351 Gene3D DnaJ domain 102 220 IPR036869 -
Glsi02g1754 351 PRINTS DnaJ domain signature 125 140 IPR001623 -
Glsi02g1754 351 PRINTS DnaJ domain signature 107 125 IPR001623 -
Glsi02g1754 351 PRINTS DnaJ domain signature 141 161 IPR001623 -
Glsi02g1754 351 PANTHER AT29763P-RELATED 1 347 - -
Glsi02g1754 351 FunFam Chaperone protein dnaJ 49 101 220 - -
Glsi02g1754 351 SUPERFAMILY Chaperone J-domain 102 217 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1754 Glsi-ChrGlsi02 61010029 61011084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1754 100 166 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.028 4.83e-08 52.4