Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1742 ATGACGACTCCGAGAAGCGATTCTTCCGAAGATGCCTCAAACAATGAGGAATTGGAACAGGGAAAATATGAGAATACAATCAAAGAATGCACTAAAGCATTAGAACTCAATCCTGTATATGTTATAGCTTTGGTGAGAAGAGGTGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCCATTGCTGATATGAAAAAGATTTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAGAACCATTCGAAGACTGGAACCCTTGGCTGCAGAAAAGCGAGAAAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGCAATTCTGTGTTGGGCCGCTTTGGGATGAGCGTGGACAACTTTAAAGCTGTTAAAGATCCGAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 417 0.4029 MTTPRSDSSEDASNNEELEQGKYENTIKECTKALELNPVYVIALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARRTIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1742 138 SMART tpr_5 10 40 IPR019734 GO:0005515
Glsi02g1742 138 SMART tpr_5 41 74 IPR019734 GO:0005515
Glsi02g1742 138 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Glsi02g1742 138 Gene3D Tetratricopeptide repeat domain 16 100 IPR011990 GO:0005515
Glsi02g1742 138 Pfam Tetratricopeptide repeat 42 74 IPR013105 -
Glsi02g1742 138 MobiDBLite consensus disorder prediction 1 23 - -
Glsi02g1742 138 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 18 138 - -
Glsi02g1742 138 SUPERFAMILY TPR-like 18 85 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1742 Glsi-ChrGlsi02 60118914 60121082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1742 23 97 Calmodulin-binding Proteins AT3G25230 42.667 6.18e-09 51.2