Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1710 ATGAATCCGAGCAACGCCAAGGGATCCATGTCAACTACTAGTGCAGCTTGGAAATCCGGTGACGGGGCTGCCGACCAGTTTCCGGCGGGGCTACGGGTACTTGTAGTGGATGATGATCCCACATGCCTTAGGATCCTTGAGAAGATGCTTTGCACTTGCCTATACGAAGTTACGAAATGCAATCGAGCAGAGGCTGCATTGTCACTTCTGAGAGAGAGCAAAAATGGGTTCGACATAGTTATAAGTGATGTGCATATGCCAGACATGGATGGCTTTAAACTTTTAGAGCACATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGAAAAAAATGTTGTCATGAAAGGTGTGACACATGGTGCTTGTGATTATCTGATAAAACCTGTGCGTATTGAGGCTCTGAAGAATATATGGCAGCATGTGGTTCGGAAAAGAAAGAATGAGTGGAAGGATTTGGAGCAATCCTGTAGTGCAGAAGAAGGAGATCGACGGCAAAAGCCATCTGACGAAGCTGAATACTCATCCTCTGCAAATGAAGGAAATTGTAGAAATGTGAAGAAAAAGAGGGATGAGGAGGAAGAAGTAGAGGAGAGGGATGATACATCCACGTTGAAGAAGCCTCGAGTTGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGAATTGATAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCAAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACTTGAACAACTCTTTCATCAACTCCCAAGATGCAACCTTTGGAGCAATATCGACATTCAATGGAATTGATCTTCAAACTCTTGCAGCTGCTAGCCAGCTTCCAGCACAAAGTCTGGCAACACTTCAAGCTGCAGGGCTTGGTAGATCAACTGCTAAGGCTGGTGTACCCATGCCCCTCATTGACGAAGGGAACCTTTTCAGTTTTGAAAACCCAAGATTGAGATTTGGAGAAGGGTTACAGCAGCATTTGAACAGTACTAAACCAATGAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCAAATTTACACCAATCCACACAATCACTTGGTGGCTTGAATGTGCGAGTCAATTCATCAGCTCCCCAGAGCAGCTCCTTATTGATGCAGATGGCTCAATCCCAACCAAGAGGTCAGATGCTAAGTGAAAATAATGGTTCTCATGTTCCGAGACTTCCATCATCTGTGGGGCAGCCTACTGTACCAAATGGAATTTCTAATGGTGTTCCAGGCAGAAATGGGATTGCTGATAGTAACAGAGGAGCTTCTTATAATTCAGTTCCACAAACTTCTCCATTGATGAGTTTTCCCATGAGCCAAACTACAGAAATGTCTGTCAGTAGTTTCCCACTTGGAAGCACACGAGGCATATCTAGTATCACATCAAAAGGCACATTTCAAGAGGAAGTTACTTCAGGAATTAAAGGATCTGGTGGATTTGTTCCAAGTTATGATATATTTAATGAACTGCAACAGCAGAAGTCCCATGATTGGGAGTTACAAAATGTGGGCCTGACGTATGATACCTCTCAACACACAAATCCTTTACAAGGTAATGTTAATGTCTCACCATCAGTTTTAGTCCATCAGGGCTTCTCTTCTACCCAACAGACTGGCCAGAATAGAGATGCTACTCCGATTGGAAAAGCCATGTTTTCCCTAGGGAAAGGCATGGAACAAGGAAATCTTCAAAATATGGGTCAACACCTCCATCCACTTCTTGTTGAAAATTCTGCAAGGGTTAAGGCTGAAAGAATTTCTGATGCAAGCTCCCATTCTAACCTTTTACCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCATTTTTGAAACAGCAAGAAGGCATTGGAGCAGCGGAGAATGAATTTGACTTTGATGGATATTCCATGGACAACATTCCCGTCTAG 2034 0.4361 MNPSNAKGSMSTTSAAWKSGDGAADQFPAGLRVLVVDDDPTCLRILEKMLCTCLYEVTKCNRAEAALSLLRESKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDEKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSCSAEEGDRRQKPSDEAEYSSSANEGNCRNVKKKRDEEEEVEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFINSQDATFGAISTFNGIDLQTLAAASQLPAQSLATLQAAGLGRSTAKAGVPMPLIDEGNLFSFENPRLRFGEGLQQHLNSTKPMNLLHGIPTNMEPKQLANLHQSTQSLGGLNVRVNSSAPQSSSLLMQMAQSQPRGQMLSENNGSHVPRLPSSVGQPTVPNGISNGVPGRNGIADSNRGASYNSVPQTSPLMSFPMSQTTEMSVSSFPLGSTRGISSITSKGTFQEEVTSGIKGSGGFVPSYDIFNELQQQKSHDWELQNVGLTYDTSQHTNPLQGNVNVSPSVLVHQGFSSTQQTGQNRDATPIGKAMFSLGKGMEQGNLQNMGQHLHPLLVENSARVKAERISDASSHSNLLPEHYGQEDLMSAFLKQQEGIGAAENEFDFDGYSMDNIPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1710 677 MobiDBLite consensus disorder prediction 157 175 - -
Glsi02g1710 677 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Glsi02g1710 677 Gene3D - 31 167 - -
Glsi02g1710 677 Pfam Response regulator receiver domain 33 141 IPR001789 GO:0000160
Glsi02g1710 677 FunFam Two-component response regulator 207 270 - -
Glsi02g1710 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 390 IPR045279 GO:0009736
Glsi02g1710 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Glsi02g1710 677 PIRSF RR_ARR_type-B 9 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Glsi02g1710 677 MobiDBLite consensus disorder prediction 157 206 - -
Glsi02g1710 677 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Glsi02g1710 677 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Glsi02g1710 677 FunFam Two-component response regulator 31 168 - -
Glsi02g1710 677 Gene3D - 208 270 - -
Glsi02g1710 677 SUPERFAMILY CheY-like 30 154 IPR011006 -
Glsi02g1710 677 MobiDBLite consensus disorder prediction 187 206 - -
Glsi02g1710 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 267 IPR017930 -
Glsi02g1710 677 CDD REC_typeB_ARR-like 33 147 - -
Glsi02g1710 677 SMART REC_2 31 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1710 Glsi-ChrGlsi02 51935959 51939352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1710 66 677 Response Regulator Gene Family AT3G16857 50.610 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi02g1710 Response_reg 4.2e-23 CL0304