Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1703 ATGGAGAATACAACAGAACTGAGGACTTCTTTGGCGGGTGATGGGCTGAGCGCATTCTCGTCATTTCACATCGACCAGATCCGGTTCTTCTCTGATTCTATCTACTTCTCTGTTTCCTTTCACCTGGAAACCAAGAGGCAAGAGCTTCATTCAACACCCATTACCCACTTCCCGCAATCAGTTATTTTCAACTGGATTTGTTTTAGATCTTCGAAATATCTAGTGGAAATGGTCGATCCGAGTGGAAAAGGATCAGAAGCTGAGGACGCTAATGCAAGGAATCCAAACGGGGCTTCATCAGGGGAGAGCCCAATGAGCGAGCAGCAGAAGAAAACCTGCGCCGATTGCGGTACAAGCAAGACCCCTCTCTGGAGGGGTGGTCCAGCTGGGCCTAAGTCACTATGCAACGCTTGTGGGATCAGAAGCAGGAAGAAGAAAAGAGCGATCCTGGGTTTGAACAAGCCAAGCTCGGAAGATAAAAAAGGGAAAAGAAACAGTAATGGTAGAAGTAAGCTTGGGGATAGTTTGAAGCAGAGATTTTTGGCTTTGGGAAGAGAGGTTTTAATGCAGAGATCGACGGTGGAGAGGCAGAGGAAGAAGTTGGGAGAGGAAGAACAAGCAGCGGTGTTGTTAATGGCTCTCTCTTATGGCTCCGTCTATGCTTAA 666 0.4745 MENTTELRTSLAGDGLSAFSSFHIDQIRFFSDSIYFSVSFHLETKRQELHSTPITHFPQSVIFNWICFRSSKYLVEMVDPSGKGSEAEDANARNPNGASSGESPMSEQQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGLNKPSSEDKKGKRNSNGRSKLGDSLKQRFLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1703 221 ProSiteProfiles GATA-type zinc finger domain profile. 107 143 IPR000679 GO:0006355|GO:0043565
Glsi02g1703 221 PANTHER OS01G0976800 PROTEIN 83 221 - -
Glsi02g1703 221 MobiDBLite consensus disorder prediction 80 114 - -
Glsi02g1703 221 Pfam GATA zinc finger 113 147 IPR000679 GO:0006355|GO:0043565
Glsi02g1703 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 147 - -
Glsi02g1703 221 ProSitePatterns GATA-type zinc finger domain. 113 138 IPR000679 GO:0006355|GO:0043565
Glsi02g1703 221 MobiDBLite consensus disorder prediction 92 114 - -
Glsi02g1703 221 CDD ZnF_GATA 112 172 IPR000679 GO:0006355|GO:0043565
Glsi02g1703 221 MobiDBLite consensus disorder prediction 151 170 - -
Glsi02g1703 221 Gene3D - 107 173 IPR013088 GO:0006355|GO:0008270
Glsi02g1703 221 SMART GATA_3 107 157 IPR000679 GO:0006355|GO:0043565
Glsi02g1703 221 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1703 Glsi-ChrGlsi02 51216276 51217589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1703 109 221 C2C2-Gata Transcription Factor Family AT3G06740 72.174 4.12e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi02g1703 GATA 2.8e-16 CL0167