Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1701 ATGTCGCTCAGGCCAAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTCGACGCCGATGAGGGCCGCCGAAGAAGAGAAGACAATATGGTTGAGATCCGTAAGAGCAAGCGCGAAGAGAGCTTGCTGAAGAAGCGTCGCGAAGGCCTCCAAGCTCAGCAGCAATTCCCCACTCCTCTTCAAACTTCTACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCAATGGTTGCTGGGGTTTGGTCGGATGACAGCAGTCTGCAGCTGGAAGCGACTACCCAATTTCGGAAGCTGCTTTCTATTGAGCGAAGCCCTCCAATTGAGGAAGTTATTCAATCCGGTGTTGTGCCACGTTTTGTTGAGTTTCTCGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCCGCATGGGCTCTCACAAACATAGCATCCGGAACTTCTGAGAACACCAAGGTGGTAATTGATCATGGGGCAGTTCCAATATTTGTTAAGCTACTTAGTTCTCCAAGTGATGATGTTCGGGAACAGGCCGTTTGGGCACTGGGAAATGTTGCTGGTGACTCACCTAGGTGCCGTGATCTTGTTCTCAGCCATGGTGCCCTGATCCCTTTGTTGGCCCAGTTGAATGAGCATGCCAAACTTTCAATGTTAAGAAATGCTACATGGACACTATCAAATTTTTGCAGGGGCAAGCCACAGCCCCCATTTGAGCAGGTGCGGCCAGCACTTCCAGCCCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGCCTGCTGGGCACTTTCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGGTCGATTAGTGCAGCTCCTTCTGCATCATTCTCCTTCAGTTCTTATCCCTGCTCTTCGCACAGTGGGAAATATTGTGACAGGAGATGATGTTCAGACTCAGTGTATTATCAATCATGGTGCACTACCATGCCTTTTGAGCCTGTTGACACATAATCATAAGAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTTTGATTGCTCCCCTTGTCAATCTCCTCCAAAATGCTGAATTTGATATTAAGAAAGAAGCTGCATGGGCAATCTCAAATGCTACGTCTGGTGGTACTCATGAGCAGATCAAGTACCTGGTGAGTCAAGGATGCATAAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTAGGAGAAGCTGAGAAGAGCCTGGGTAATACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGATAACAACGAAATATATGAGAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGAAGAGGACGAGACCCTACCTTCAGGTGATGGTGCTCAACCTACTTTCAATTTTGGGGGCAGTGAGAATCCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1593 0.4652 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFPTPLQTSTVEKKLESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHHSPSVLIPALRTVGNIVTGDDVQTQCIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPTFNFGGSENPVPSGGFNFS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1701 530 MobiDBLite consensus disorder prediction 507 530 - -
Glsi02g1701 530 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Glsi02g1701 530 Gene3D - 73 496 IPR011989 -
Glsi02g1701 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Glsi02g1701 530 MobiDBLite consensus disorder prediction 502 530 - -
Glsi02g1701 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Glsi02g1701 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Glsi02g1701 530 PANTHER IMPORTIN ALPHA 12 501 - -
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 316 357 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Glsi02g1701 530 Coils Coil 36 56 - -
Glsi02g1701 530 Gene3D - 11 50 IPR036975 GO:0006606
Glsi02g1701 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Glsi02g1701 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Glsi02g1701 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Glsi02g1701 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Glsi02g1701 530 FunFam Importin subunit alpha 11 50 - -
Glsi02g1701 530 FunFam Importin subunit alpha 73 496 - -
Glsi02g1701 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Glsi02g1701 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 148 188 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 233 272 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 359 399 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 274 314 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 402 442 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 189 231 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 105 146 IPR000225 GO:0005515
Glsi02g1701 530 SMART arm_5 316 357 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1701 Glsi-ChrGlsi02 51104366 51108376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1701 131 391 U-box Gene Family AT3G46510 24.904 1.35e-09 58.9