Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1673 ATGGTTGAGCAACGAGCTACACTGTGGCTAAATGATGGTTGCGGTTTCATGGCAGGAGTAGCACCCGAGGGTTCCCAATATGATGCTCGTCAATATGATTCCAAAATGAATGATTTGCTTACTGCTGATGGACAGGATTTCTTTACTTCTTATGATGAGATTTATGATAGTTTTGATGCTATGGGGTTGCAAGAGAATCTTCTCAGAGGCATTTACGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGAGGAATTGTTCCCTTCTGCAAGGGACTTGATGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGGATTTTGCAGCAACTTGACTATGGTTTGATGGAATGTCAGGCCTTAGTTTTAGCACCAACTCGAGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGGGATTACCTTGGCGTGAGGGTGCATGCATGTGTGGGTGGAACCAGTGTTCGTGAAGACCAACGGATTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGCAGGCAGTCACTTCGACCAGATTGCATCAAGATGTTTGTATTGGATGAGGCAGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTGCCATCCAAGATTCAGGTGGGAGTTTTTTCTGCTACAATGCCTCCTGAGGCTCTTGAGATCACTAGGAAATTTATGAACAAACCTGTTAGGATCCTTGTGAAACGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTCCATGTCAATGTTGAGAGAGAGGAATGGAAGCTGGACACGCTTTGTGATCTTTATGAGACATTAGCCATTACTCAGAGTGTCATTTTTGTAAACACCAGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGGGACCACACTGTTTCAGCTACCCATGGAGACATGGATCAGAACACCAGAGATATTATTATGCGTGAATTCCGTTCTGGATCTTCTCGTGTTTTGATAACAACTGATCTGTTGGCACGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATTAATTATGATCTCCCTACTCAGCCTGAGAACTATCTTCATCGCATTGGTCGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCAATCAACTTTGTGACAAAGGATGATGAAAGAATGCTGTTTGATATCCAGAGGTTTTATAATGTGGTTATTGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAA 1290 0.4372 MVEQRATLWLNDGCGFMAGVAPEGSQYDARQYDSKMNDLLTADGQDFFTSYDEIYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVIEELPSNVAELL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1673 429 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 56 84 IPR014014 GO:0003724
Glsi02g1673 429 SMART helicmild6 309 390 IPR001650 -
Glsi02g1673 429 SMART ultradead3 75 272 IPR014001 -
Glsi02g1673 429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 429 IPR001650 -
Glsi02g1673 429 Gene3D - 265 429 IPR027417 -
Glsi02g1673 429 CDD DEADc_EIF4A 60 258 - -
Glsi02g1673 429 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Glsi02g1673 429 Pfam Helicase conserved C-terminal domain 282 390 IPR001650 -
Glsi02g1673 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 410 IPR027417 -
Glsi02g1673 429 FunFam Eukaryotic initiation factor 4A-III 264 429 - -
Glsi02g1673 429 PANTHER RNA HELICASE 42 413 - -
Glsi02g1673 429 Gene3D - 46 264 IPR027417 -
Glsi02g1673 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 257 IPR014001 -
Glsi02g1673 429 FunFam Eukaryotic initiation factor 4A-II 44 263 - -
Glsi02g1673 429 CDD SF2_C_DEAD 269 399 - -
Glsi02g1673 429 Pfam DEAD/DEAH box helicase 81 242 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1673 Glsi-ChrGlsi02 46866682 46871057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1673 17 429 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 764