LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g1666	ATGGTAATGGAGGATTCGGTAGGGCAAAAGCGGAATCACCGAGAGTTTGCTTTGGCATCAGTTGCTGAGCTCTCTTCGGCTGCCTCTACTTCGCCGGGGATTGCTCGCTTCACTTCCGACGGTTCCGTGGCGGAGCTGCATATTCATCAGGATTCTCATCAGATTACTCTCGATGTCGATCTTCGAATTGCACAACTATTCAAGTTAGGACCTGTTCAATCGGTTTGCATGGTGGAAGGGTCTGATATCGGTAAAGAGACATCATTCTCAAGGGGTATTGCTATCCAATTTAGAAATGAGGAGGATAGTGGGGCCTTCGATGGTGTATTCCAGCAATGGAAGAAGGAAGTCAATGTTCAAGGTAGAAACTTACCGAATGGAACTATTTCAAATTCTAAAAGCAAATTTGATGAAAAGATAGAGCCATCTTCTGCAAAAATGTATTTCCATTACTATGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGAACAGGAACCTATTATGCTGCAGTTATTGAGAACAATGCTGATTTCGCAGGCCGTGTAGTAGTTGATGTTGGTGCTGGTAGTGGTATTTTGTCACTATTTGCTGCTCAGGCTGGCGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAATATGCTCGGAAGCTGATAGCTGGGAACCCAACACTTGGTCAACGAATTACAGTTATTAAAGGCAAGGTTGAGGATGTTGAATTGCCAGAGAAAGCTGATATTTTGATTTCTGAGCCCATGGGCACCTTGTTAATTAATGAAAGAATGCTGGAGTCTTACGTCATTGCTAGAGATAGGTTTCTCACCCCTATTGGGAAAATGTTTCCTACTGTAGGAAGGATTCACATGGCACCTTTCACTGATGAATATTTGTTTGTCGAAATTGCTAATAAGGCCCTCTTTTGGCAGCAACAGAACTATTATGGTGTTGATTTGACTCCCTTATATGGGACTGCATTCCAAGGATACTTTTCTCAGCCCGTAGTGGATGCTTTTGATCCAAGATTGTTAATAGCTCCTCCTATGTTCCATGTGATAGACTTCACCAAAATAAAGGAAGAAGATCTGTATGAAATTGACATTCCTTTGAGATTCATAGCCTCTGTGGGTGCCCGAGTGCATGGGTTGGCCTGTTGGTTTGATGTACTATTCAATGGAAGCACTGTGCAAAGGTGGCTTACGACGGCCCCTGGTTCACCAACAACCCACTGGTACCAGTTACGCTGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGACAAGAAATTACTGGCAGGCTGCACATGATTGCCCACAATGCACAGAGTTATACAATATATTTAACATTGTCAGCTAAAATGTGGGGCCCCGGTGCTGAACAAGGAGGGATTCTTCAAACTTCATCATGCAAACTTGATCTGAAAGAACCCTACTATAGAATGTCTCAACCTCAAGCTTATGCTTTAGCACAAGACCAGCAACCACAACCACTTCTACAAACACAGGACATACCGATCCAACCTCAGGATTTGGATGAACCTGGGATAATGCAACAGCCTTTGCCTAATTCATGTGCTCAGGTTAATTCACTGATGCAGAATGTTTAA	1623	0.4325	MVMEDSVGQKRNHREFALASVAELSSAASTSPGIARFTSDGSVAELHIHQDSHQITLDVDLRIAQLFKLGPVQSVCMVEGSDIGKETSFSRGIAIQFRNEEDSGAFDGVFQQWKKEVNVQGRNLPNGTISNSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENNADFAGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPTLGQRITVIKGKVEDVELPEKADILISEPMGTLLINERMLESYVIARDRFLTPIGKMFPTVGRIHMAPFTDEYLFVEIANKALFWQQQNYYGVDLTPLYGTAFQGYFSQPVVDAFDPRLLIAPPMFHVIDFTKIKEEDLYEIDIPLRFIASVGARVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHMIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALAQDQQPQPLLQTQDIPIQPQDLDEPGIMQQPLPNSCAQVNSLMQNV	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g1666	540	FunFam	Probable histone-arginine methyltransferase CARM1	128	288	-	-
	Glsi02g1666	540	FunFam	Probable histone-arginine methyltransferase CARM1	290	497	-	-
	Glsi02g1666	540	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	151	462	IPR029063	-
	Glsi02g1666	540	Gene3D	-	290	498	-	-
	Glsi02g1666	540	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	183	257	-	-
	Glsi02g1666	540	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	141	456	IPR025799	GO:0016274\|GO:0018216
	Glsi02g1666	540	CDD	AdoMet_MTases	187	258	-	-
	Glsi02g1666	540	Gene3D	Vaccinia Virus protein VP39	127	288	IPR029063	-
	Glsi02g1666	540	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	116	471	IPR025799	GO:0016274\|GO:0018216

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g1666	Glsi-ChrGlsi02	45750901	45758918	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g1666	50	437	C2H2 Transcription Factor Family	AT3G12270	28.986	3.66e-37	143